Literature DB >> 31790873

Molecular structure in biomolecular condensates.

Ivan Peran1, Tanja Mittag2.   

Abstract

Evidence accumulated over the past decade provides support for liquid-liquid phase separation as the mechanism underlying the formation of biomolecular condensates, which include not only 'membraneless' organelles such as nucleoli and RNA granules, but additional assemblies involved in transcription, translation and signaling. Understanding the molecular mechanisms of condensate function requires knowledge of the structures of their constituents. Current knowledge suggests that structures formed via multivalent domain-motif interactions remain largely unchanged within condensates. Two different viewpoints exist regarding structures of disordered low-complexity domains within condensates; one argues that low-complexity domains remain largely disordered in condensates and their multivalency is encoded in short motifs called 'stickers', while the other argues that the sequences form cross-β structures resembling amyloid fibrils. We review these viewpoints and highlight outstanding questions that will inform structure-function relationships for biomolecular condensates.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31790873      PMCID: PMC7117980          DOI: 10.1016/j.sbi.2019.09.007

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  73 in total

1.  Germline P granules are liquid droplets that localize by controlled dissolution/condensation.

Authors:  Clifford P Brangwynne; Christian R Eckmann; David S Courson; Agata Rybarska; Carsten Hoege; Jöbin Gharakhani; Frank Jülicher; Anthony A Hyman
Journal:  Science       Date:  2009-05-21       Impact factor: 47.728

2.  Phase separation and clustering of an ABC transporter in Mycobacterium tuberculosis.

Authors:  Florian Heinkel; Libin Abraham; Mary Ko; Joseph Chao; Horacio Bach; Lok Tin Hui; Haoran Li; Mang Zhu; Yeou Mei Ling; Jason C Rogalski; Joshua Scurll; Jennifer M Bui; Thibault Mayor; Michael R Gold; Keng C Chou; Yossef Av-Gay; Lawrence P McIntosh; Jörg Gsponer
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-31       Impact factor: 11.205

3.  mRNA structure determines specificity of a polyQ-driven phase separation.

Authors:  Erin M Langdon; Yupeng Qiu; Amirhossein Ghanbari Niaki; Grace A McLaughlin; Chase A Weidmann; Therese M Gerbich; Jean A Smith; John M Crutchley; Christina M Termini; Kevin M Weeks; Sua Myong; Amy S Gladfelter
Journal:  Science       Date:  2018-04-12       Impact factor: 47.728

4.  Transcription Factors Activate Genes through the Phase-Separation Capacity of Their Activation Domains.

Authors:  Ann Boija; Isaac A Klein; Benjamin R Sabari; Alessandra Dall'Agnese; Eliot L Coffey; Alicia V Zamudio; Charles H Li; Krishna Shrinivas; John C Manteiga; Nancy M Hannett; Brian J Abraham; Lena K Afeyan; Yang E Guo; Jenna K Rimel; Charli B Fant; Jurian Schuijers; Tong Ihn Lee; Dylan J Taatjes; Richard A Young
Journal:  Cell       Date:  2018-11-15       Impact factor: 41.582

5.  Stress-Triggered Phase Separation Is an Adaptive, Evolutionarily Tuned Response.

Authors:  Joshua A Riback; Christopher D Katanski; Jamie L Kear-Scott; Evgeny V Pilipenko; Alexandra E Rojek; Tobin R Sosnick; D Allan Drummond
Journal:  Cell       Date:  2017-03-09       Impact factor: 41.582

6.  Mechanistic View of hnRNPA2 Low-Complexity Domain Structure, Interactions, and Phase Separation Altered by Mutation and Arginine Methylation.

Authors:  Veronica H Ryan; Gregory L Dignon; Gül H Zerze; Charlene V Chabata; Rute Silva; Alexander E Conicella; Joshua Amaya; Kathleen A Burke; Jeetain Mittal; Nicolas L Fawzi
Journal:  Mol Cell       Date:  2018-01-18       Impact factor: 17.970

Review 7.  Single-molecule fluorescence studies of intrinsically disordered proteins and liquid phase separation.

Authors:  Irem Nasir; Paulo L Onuchic; Sergio R Labra; Ashok A Deniz
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2019-05-02       Impact factor: 3.036

8.  Atomic-resolution structure of a disease-relevant Aβ(1-42) amyloid fibril.

Authors:  Marielle Aulikki Wälti; Francesco Ravotti; Hiromi Arai; Charles G Glabe; Joseph S Wall; Anja Böckmann; Peter Güntert; Beat H Meier; Roland Riek
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-28       Impact factor: 11.205

9.  m6A enhances the phase separation potential of mRNA.

Authors:  Ryan J Ries; Sara Zaccara; Pierre Klein; Anthony Olarerin-George; Sim Namkoong; Brian F Pickering; Deepak P Patil; Hojoong Kwak; Jun Hee Lee; Samie R Jaffrey
Journal:  Nature       Date:  2019-07-10       Impact factor: 69.504

10.  Tau protein liquid-liquid phase separation can initiate tau aggregation.

Authors:  Susanne Wegmann; Bahareh Eftekharzadeh; Katharina Tepper; Katarzyna M Zoltowska; Rachel E Bennett; Simon Dujardin; Pawel R Laskowski; Danny MacKenzie; Tarun Kamath; Caitlin Commins; Charles Vanderburg; Allyson D Roe; Zhanyun Fan; Amandine M Molliex; Amayra Hernandez-Vega; Daniel Muller; Anthony A Hyman; Eckhard Mandelkow; J Paul Taylor; Bradley T Hyman
Journal:  EMBO J       Date:  2018-02-22       Impact factor: 11.598

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  23 in total

Review 1.  Emerging Roles for Phase Separation in Plants.

Authors:  Ryan J Emenecker; Alex S Holehouse; Lucia C Strader
Journal:  Dev Cell       Date:  2020-10-12       Impact factor: 12.270

Review 2.  Phase-separated bacterial ribonucleoprotein bodies organize mRNA decay.

Authors:  Nisansala S Muthunayake; Dylan T Tomares; W Seth Childers; Jared M Schrader
Journal:  Wiley Interdiscip Rev RNA       Date:  2020-05-23       Impact factor: 9.957

Review 3.  Biomolecular condensates at the nexus of cellular stress, protein aggregation disease and ageing.

Authors:  Simon Alberti; Anthony A Hyman
Journal:  Nat Rev Mol Cell Biol       Date:  2021-01-28       Impact factor: 94.444

4.  The STING phase-separator suppresses innate immune signalling.

Authors:  Xiaoyu Yu; Liyuan Zhang; Jingxiang Shen; Yanfang Zhai; Qifei Jiang; Mengran Yi; Xiaobing Deng; Ziran Ruan; Run Fang; Zhaolong Chen; Xiaohan Ning; Zhengfan Jiang
Journal:  Nat Cell Biol       Date:  2021-04-08       Impact factor: 28.824

5.  In vivo liquid-liquid phase separation protects amyloidogenic and aggregation-prone peptides during overexpression in Escherichia coli.

Authors:  Bartosz Gabryelczyk; Reema Alag; Margaret Philips; Kimberly Low; Anandalakshmi Venkatraman; Bhuvaneswari Kannaian; Xiangyan Shi; Markus Linder; Konstantin Pervushin; Ali Miserez
Journal:  Protein Sci       Date:  2022-05       Impact factor: 6.725

6.  ALS mutations in the TIA-1 prion-like domain trigger highly condensed pathogenic structures.

Authors:  Naotaka Sekiyama; Kiyofumi Takaba; Saori Maki-Yonekura; Ken-Ichi Akagi; Yasuko Ohtani; Kayo Imamura; Tsuyoshi Terakawa; Keitaro Yamashita; Daigo Inaoka; Koji Yonekura; Takashi S Kodama; Hidehito Tochio
Journal:  Proc Natl Acad Sci U S A       Date:  2022-09-16       Impact factor: 12.779

Review 7.  Biomolecular Condensates and Cancer.

Authors:  Ann Boija; Isaac A Klein; Richard A Young
Journal:  Cancer Cell       Date:  2021-01-07       Impact factor: 31.743

8.  RNA-Mediated Feedback Control of Transcriptional Condensates.

Authors:  Jonathan E Henninger; Ozgur Oksuz; Krishna Shrinivas; Ido Sagi; Gary LeRoy; Ming M Zheng; J Owen Andrews; Alicia V Zamudio; Charalampos Lazaris; Nancy M Hannett; Tong Ihn Lee; Phillip A Sharp; Ibrahim I Cissé; Arup K Chakraborty; Richard A Young
Journal:  Cell       Date:  2020-12-16       Impact factor: 41.582

9.  JRAB/MICAL-L2 undergoes liquid-liquid phase separation to form tubular recycling endosomes.

Authors:  Ayuko Sakane; Taka-Aki Yano; Takayuki Uchihashi; Kazuki Horikawa; Yusuke Hara; Issei Imoto; Shusaku Kurisu; Hiroshi Yamada; Kohji Takei; Takuya Sasaki
Journal:  Commun Biol       Date:  2021-05-11

Review 10.  Chemical and Biomolecular Strategies for STING Pathway Activation in Cancer Immunotherapy.

Authors:  Kyle M Garland; Taylor L Sheehy; John T Wilson
Journal:  Chem Rev       Date:  2022-02-02       Impact factor: 60.622

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