Literature DB >> 32169484

Liquid-Liquid Phase Separation and Its Mechanistic Role in Pathological Protein Aggregation.

W Michael Babinchak1, Witold K Surewicz2.   

Abstract

Liquid-liquid phase separation (LLPS) of proteins underlies the formation of membrane-less organelles. While it has been recognized for some time that these organelles are of key importance for normal cellular functions, a growing number of recent observations indicate that LLPS may also play a role in disease. In particular, numerous proteins that form toxic aggregates in neurodegenerative diseases, such as amyotrophic lateral sclerosis, frontotemporal lobar degeneration, and Alzheimer's disease, were found to be highly prone to phase separation, suggesting that there might be a strong link between LLPS and the pathogenic process in these disorders. This review aims to assess the molecular basis of this link through exploration of the intermolecular interactions that underlie LLPS and aggregation and the underlying mechanisms facilitating maturation of liquid droplets into more stable assemblies, including so-called labile fibrils, hydrogels, and pathological amyloids. Recent insights into the structural basis of labile fibrils and potential mechanisms by which these relatively unstable structures could transition into more stable pathogenic amyloids are also discussed. Finally, this review explores how the environment of liquid droplets could modulate protein aggregation by altering kinetics of protein self-association, affecting folding of protein monomers, or changing aggregation pathways.
Copyright © 2020 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  amyloid; liquid–liquid phase separation; neurodegenerative diseases; protein aggregation

Mesh:

Substances:

Year:  2020        PMID: 32169484      PMCID: PMC7395662          DOI: 10.1016/j.jmb.2020.03.004

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  123 in total

1.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

2.  Transformation of amyloid-like fibers, formed from an elastin-based biopolymer, into a hydrogel: an X-ray photoelectron spectroscopy and atomic force microscopy study.

Authors:  R Flamia; A M Salvi; L D'Alessio; J E Castle; A M Tamburro
Journal:  Biomacromolecules       Date:  2007-01       Impact factor: 6.988

Review 3.  The tip of the iceberg: RNA-binding proteins with prion-like domains in neurodegenerative disease.

Authors:  Oliver D King; Aaron D Gitler; James Shorter
Journal:  Brain Res       Date:  2012-01-21       Impact factor: 3.252

4.  Cold denaturation of α-synuclein amyloid fibrils.

Authors:  Tatsuya Ikenoue; Young-Ho Lee; József Kardos; Miyu Saiki; Hisashi Yagi; Yasushi Kawata; Yuji Goto
Journal:  Angew Chem Int Ed Engl       Date:  2014-06-11       Impact factor: 15.336

Review 5.  RNA Binding Proteins and the Pathogenesis of Frontotemporal Lobar Degeneration.

Authors:  Jeffrey W Hofmann; William W Seeley; Eric J Huang
Journal:  Annu Rev Pathol       Date:  2018-10-24       Impact factor: 23.472

Review 6.  "New Old Pathologies": AD, PART, and Cerebral Age-Related TDP-43 With Sclerosis (CARTS).

Authors:  Peter T Nelson; John Q Trojanowski; Erin L Abner; Omar M Al-Janabi; Gregory A Jicha; Frederick A Schmitt; Charles D Smith; David W Fardo; Wang-Xia Wang; Richard J Kryscio; Janna H Neltner; Walter A Kukull; Matthew D Cykowski; Linda J Van Eldik; Eseosa T Ighodaro
Journal:  J Neuropathol Exp Neurol       Date:  2016-05-21       Impact factor: 3.685

7.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Authors:  Alexander E Conicella; Gül H Zerze; Jeetain Mittal; Nicolas L Fawzi
Journal:  Structure       Date:  2016-08-18       Impact factor: 5.006

8.  Regulation of zebrafish dorsoventral patterning by phase separation of RNA-binding protein Rbm14.

Authors:  Yue Xiao; Jiehui Chen; Yihan Wan; Qi Gao; Naihe Jing; Yixian Zheng; Xueliang Zhu
Journal:  Cell Discov       Date:  2019-07-23       Impact factor: 10.849

9.  Gel formation in protein amyloid aggregation: a physical mechanism for cytotoxicity.

Authors:  Daniel Woodard; Dylan Bell; David Tipton; Samuel Durrance; Lisa Cole Burnett; Lisa Cole; Bin Li; Shaohua Xu
Journal:  PLoS One       Date:  2014-04-16       Impact factor: 3.240

Review 10.  Phase transitions and size scaling of membrane-less organelles.

Authors:  Clifford P Brangwynne
Journal:  J Cell Biol       Date:  2013-12-23       Impact factor: 10.539

View more
  35 in total

1.  Regulatory mechanisms of tau protein fibrillation under the conditions of liquid-liquid phase separation.

Authors:  Solomiia Boyko; Krystyna Surewicz; Witold K Surewicz
Journal:  Proc Natl Acad Sci U S A       Date:  2020-12-01       Impact factor: 11.205

Review 2.  Liquid-liquid phase separation as an organizing principle of intracellular space: overview of the evolution of the cell compartmentalization concept.

Authors:  Iuliia A Antifeeva; Alexander V Fonin; Anna S Fefilova; Olesya V Stepanenko; Olga I Povarova; Sergey A Silonov; Irina M Kuznetsova; Vladimir N Uversky; Konstantin K Turoverov
Journal:  Cell Mol Life Sci       Date:  2022-04-20       Impact factor: 9.261

Review 3.  Conformational Dynamics of Intrinsically Disordered Proteins Regulate Biomolecular Condensate Chemistry.

Authors:  Anton Abyzov; Martin Blackledge; Markus Zweckstetter
Journal:  Chem Rev       Date:  2022-02-18       Impact factor: 60.622

Review 4.  Mechanistic Models of Protein Aggregation Across Length-Scales and Time-Scales: From the Test Tube to Neurodegenerative Disease.

Authors:  Georg Meisl; Tuomas P J Knowles; David Klenerman
Journal:  Front Neurosci       Date:  2022-06-30       Impact factor: 5.152

Review 5.  Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems.

Authors:  Ellie I James; Taylor A Murphree; Clint Vorauer; John R Engen; Miklos Guttman
Journal:  Chem Rev       Date:  2021-09-07       Impact factor: 72.087

Review 6.  The Proteome Folding Problem and Cellular Proteostasis.

Authors:  Evan T Powers; Lila M Gierasch
Journal:  J Mol Biol       Date:  2021-08-13       Impact factor: 6.151

7.  Missense mutations in small muscle protein X-linked (SMPX) cause distal myopathy with protein inclusions.

Authors:  Mridul Johari; Jaakko Sarparanta; Anna Vihola; Per Harald Jonson; Marco Savarese; Manu Jokela; Annalaura Torella; Giulio Piluso; Edith Said; Norbert Vella; Marija Cauchi; Armelle Magot; Francesca Magri; Eleonora Mauri; Cornelia Kornblum; Jens Reimann; Tanya Stojkovic; Norma B Romero; Helena Luque; Sanna Huovinen; Päivi Lahermo; Kati Donner; Giacomo Pietro Comi; Vincenzo Nigro; Peter Hackman; Bjarne Udd
Journal:  Acta Neuropathol       Date:  2021-05-11       Impact factor: 17.088

8.  Structural mechanism for modulation of functional amyloid and biofilm formation by Staphylococcal Bap protein switch.

Authors:  Junfeng Ma; Xiang Cheng; Zhonghe Xu; Yikan Zhang; Jaione Valle; Shilong Fan; Xiaobing Zuo; Iñigo Lasa; Xianyang Fang
Journal:  EMBO J       Date:  2021-05-28       Impact factor: 14.012

9.  Droplet and fibril formation of the functional amyloid Orb2.

Authors:  Kidist Ashami; Alexander S Falk; Connor Hurd; Samridhi Garg; Silvia A Cervantes; Anoop Rawat; Ansgar B Siemer
Journal:  J Biol Chem       Date:  2021-05-25       Impact factor: 5.157

10.  Liquid-Liquid Phase Separation in the Presence of Macromolecular Crowding and State-dependent Kinetics.

Authors:  Alick-O Vweza; Chul-Gyu Song; Kil-To Chong
Journal:  Int J Mol Sci       Date:  2021-06-22       Impact factor: 5.923

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.