Literature DB >> 35179885

Conformational Dynamics of Intrinsically Disordered Proteins Regulate Biomolecular Condensate Chemistry.

Anton Abyzov1, Martin Blackledge2,3,4, Markus Zweckstetter1,5.   

Abstract

Motions in biomolecules are critical for biochemical reactions. In cells, many biochemical reactions are executed inside of biomolecular condensates formed by ultradynamic intrinsically disordered proteins. A deep understanding of the conformational dynamics of intrinsically disordered proteins in biomolecular condensates is therefore of utmost importance but is complicated by diverse obstacles. Here we review emerging data on the motions of intrinsically disordered proteins inside of liquidlike condensates. We discuss how liquid-liquid phase separation modulates internal motions across a wide range of time and length scales. We further highlight the importance of intermolecular interactions that not only drive liquid-liquid phase separation but appear as key determinants for changes in biomolecular motions and the aging of condensates in human diseases. The review provides a framework for future studies to reveal the conformational dynamics of intrinsically disordered proteins in the regulation of biomolecular condensate chemistry.

Entities:  

Mesh:

Substances:

Year:  2022        PMID: 35179885      PMCID: PMC8949871          DOI: 10.1021/acs.chemrev.1c00774

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  237 in total

1.  A Liquid-to-Solid Phase Transition of the ALS Protein FUS Accelerated by Disease Mutation.

Authors:  Avinash Patel; Hyun O Lee; Louise Jawerth; Shovamayee Maharana; Marcus Jahnel; Marco Y Hein; Stoyno Stoynov; Julia Mahamid; Shambaditya Saha; Titus M Franzmann; Andrej Pozniakovski; Ina Poser; Nicola Maghelli; Loic A Royer; Martin Weigert; Eugene W Myers; Stephan Grill; David Drechsel; Anthony A Hyman; Simon Alberti
Journal:  Cell       Date:  2015-08-27       Impact factor: 41.582

Review 2.  Characterization of the dynamics of biomacromolecules using rotating-frame spin relaxation NMR spectroscopy.

Authors:  Arthur G Palmer; Francesca Massi
Journal:  Chem Rev       Date:  2006-05       Impact factor: 60.622

Review 3.  Atomic resolution conformational dynamics of intrinsically disordered proteins from NMR spin relaxation.

Authors:  Nicola Salvi; Anton Abyzov; Martin Blackledge
Journal:  Prog Nucl Magn Reson Spectrosc       Date:  2017-07-10       Impact factor: 9.795

4.  The Eukaryotic CO2-Concentrating Organelle Is Liquid-like and Exhibits Dynamic Reorganization.

Authors:  Elizabeth S Freeman Rosenzweig; Bin Xu; Luis Kuhn Cuellar; Antonio Martinez-Sanchez; Miroslava Schaffer; Mike Strauss; Heather N Cartwright; Pierre Ronceray; Jürgen M Plitzko; Friedrich Förster; Ned S Wingreen; Benjamin D Engel; Luke C M Mackinder; Martin C Jonikas
Journal:  Cell       Date:  2017-09-21       Impact factor: 41.582

Review 5.  Matter over mind: Liquid phase separation and neurodegeneration.

Authors:  Shana Elbaum-Garfinkle
Journal:  J Biol Chem       Date:  2019-03-26       Impact factor: 5.157

6.  Fluorescence correlation spectroscopy shows that monomeric polyglutamine molecules form collapsed structures in aqueous solutions.

Authors:  Scott L Crick; Murali Jayaraman; Carl Frieden; Ronald Wetzel; Rohit V Pappu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-30       Impact factor: 11.205

7.  ALS Mutations Disrupt Phase Separation Mediated by α-Helical Structure in the TDP-43 Low-Complexity C-Terminal Domain.

Authors:  Alexander E Conicella; Gül H Zerze; Jeetain Mittal; Nicolas L Fawzi
Journal:  Structure       Date:  2016-08-18       Impact factor: 5.006

8.  Dynamics of GCN4 facilitate DNA interaction: a model-free analysis of an intrinsically disordered region.

Authors:  Michelle L Gill; R Andrew Byrd; Arthur G Palmer
Journal:  Phys Chem Chem Phys       Date:  2016-02-17       Impact factor: 3.676

9.  Filtered FCS: species auto- and cross-correlation functions highlight binding and dynamics in biomolecules.

Authors:  Suren Felekyan; Stanislav Kalinin; Hugo Sanabria; Alessandro Valeri; Claus A M Seidel
Journal:  Chemphyschem       Date:  2012-03-07       Impact factor: 3.102

10.  Multivalent interactions between CsoS2 and Rubisco mediate α-carboxysome formation.

Authors:  Luke M Oltrogge; Thawatchai Chaijarasphong; Allen W Chen; Eric R Bolin; Susan Marqusee; David F Savage
Journal:  Nat Struct Mol Biol       Date:  2020-03-02       Impact factor: 15.369

View more
  4 in total

Review 1.  Learning the chemical grammar of biomolecular condensates.

Authors:  Henry R Kilgore; Richard A Young
Journal:  Nat Chem Biol       Date:  2022-06-27       Impact factor: 16.174

Review 2.  Protein conformation and biomolecular condensates.

Authors:  Diego S Vazquez; Pamela L Toledo; Alejo R Gianotti; Mario R Ermácora
Journal:  Curr Res Struct Biol       Date:  2022-09-14

3.  Contributions of the N-terminal intrinsically disordered region of the severe acute respiratory syndrome coronavirus 2 nucleocapsid protein to RNA-induced phase separation.

Authors:  Milan Zachrdla; Adriana Savastano; Alain Ibáñez de Opakua; Maria-Sol Cima-Omori; Markus Zweckstetter
Journal:  Protein Sci       Date:  2022-09       Impact factor: 6.993

Review 4.  AlphaFold, Artificial Intelligence (AI), and Allostery.

Authors:  Ruth Nussinov; Mingzhen Zhang; Yonglan Liu; Hyunbum Jang
Journal:  J Phys Chem B       Date:  2022-08-17       Impact factor: 3.466

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.