Literature DB >> 30467428

Ribosome assembly coming into focus.

Sebastian Klinge1, John L Woolford2.   

Abstract

In the past 25 years, genetic and biochemical analyses of ribosome assembly in yeast have identified most of the factors that participate in this complex pathway and have generated models for the mechanisms driving the assembly. More recently, the publication of numerous cryo-electron microscopy structures of yeast ribosome assembly intermediates has provided near-atomic resolution snapshots of ribosome precursor particles. Satisfyingly, these structural data support the genetic and biochemical models and provide additional mechanistic insight into ribosome assembly. In this Review, we discuss the mechanisms of assembly of the yeast small ribosomal subunit and large ribosomal subunit in the nucleolus, nucleus and cytoplasm. Particular emphasis is placed on concepts such as the mechanisms of RNA compaction, the functions of molecular switches and molecular mimicry, the irreversibility of assembly checkpoints and the roles of structural and functional proofreading of pre-ribosomal particles.

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Year:  2019        PMID: 30467428      PMCID: PMC7725133          DOI: 10.1038/s41580-018-0078-y

Source DB:  PubMed          Journal:  Nat Rev Mol Cell Biol        ISSN: 1471-0072            Impact factor:   94.444


  200 in total

1.  Crystal structure of the eukaryotic 60S ribosomal subunit in complex with initiation factor 6.

Authors:  Sebastian Klinge; Felix Voigts-Hoffmann; Marc Leibundgut; Sofia Arpagaus; Nenad Ban
Journal:  Science       Date:  2011-11-03       Impact factor: 47.728

Review 2.  Atomic structures of the eukaryotic ribosome.

Authors:  Sebastian Klinge; Felix Voigts-Hoffmann; Marc Leibundgut; Nenad Ban
Journal:  Trends Biochem Sci       Date:  2012-03-20       Impact factor: 13.807

Review 3.  One core, two shells: bacterial and eukaryotic ribosomes.

Authors:  Sergey Melnikov; Adam Ben-Shem; Nicolas Garreau de Loubresse; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Nat Struct Mol Biol       Date:  2012-06-05       Impact factor: 15.369

4.  Crystal structure of the eukaryotic 40S ribosomal subunit in complex with initiation factor 1.

Authors:  Julius Rabl; Marc Leibundgut; Sandro F Ataide; Andrea Haag; Nenad Ban
Journal:  Science       Date:  2010-12-23       Impact factor: 47.728

5.  Crystal structure of the 14-subunit RNA polymerase I.

Authors:  Carlos Fernández-Tornero; María Moreno-Morcillo; Umar J Rashid; Nicholas M I Taylor; Federico M Ruiz; Tim Gruene; Pierre Legrand; Ulrich Steuerwald; Christoph W Müller
Journal:  Nature       Date:  2013-10-23       Impact factor: 49.962

6.  RNA polymerase I structure and transcription regulation.

Authors:  Christoph Engel; Sarah Sainsbury; Alan C Cheung; Dirk Kostrewa; Patrick Cramer
Journal:  Nature       Date:  2013-10-23       Impact factor: 49.962

Review 7.  Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.

Authors:  Jesus de la Cruz; Katrin Karbstein; John L Woolford
Journal:  Annu Rev Biochem       Date:  2015-02-20       Impact factor: 23.643

Review 8.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

Review 9.  Feedback regulation of ribosome assembly.

Authors:  Jesús de la Cruz; Fernando Gómez-Herreros; Olga Rodríguez-Galán; Victoria Begley; María de la Cruz Muñoz-Centeno; Sebastián Chávez
Journal:  Curr Genet       Date:  2017-10-11       Impact factor: 3.886

10.  The structure of the eukaryotic ribosome at 3.0 Å resolution.

Authors:  Adam Ben-Shem; Nicolas Garreau de Loubresse; Sergey Melnikov; Lasse Jenner; Gulnara Yusupova; Marat Yusupov
Journal:  Science       Date:  2011-11-17       Impact factor: 47.728

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  134 in total

1.  Nucleolar localization of the yeast RNA exosome subunit Rrp44 hints at early pre-rRNA processing as its main function.

Authors:  Ellen K Okuda; Fernando A Gonzales-Zubiate; Olivier Gadal; Carla C Oliveira
Journal:  J Biol Chem       Date:  2020-06-17       Impact factor: 5.157

2.  Transient Protein-RNA Interactions Guide Nascent Ribosomal RNA Folding.

Authors:  Olivier Duss; Galina A Stepanyuk; Joseph D Puglisi; James R Williamson
Journal:  Cell       Date:  2019-11-21       Impact factor: 41.582

3.  RNA helicase-mediated regulation of snoRNP dynamics on pre-ribosomes and rRNA 2'-O-methylation.

Authors:  Gerald Ryan R Aquino; Nicolai Krogh; Philipp Hackert; Roman Martin; Jimena Davila Gallesio; Robert W van Nues; Claudia Schneider; Nicholas J Watkins; Henrik Nielsen; Katherine E Bohnsack; Markus T Bohnsack
Journal:  Nucleic Acids Res       Date:  2021-04-19       Impact factor: 16.971

Review 4.  Ribosome Biogenesis in Plants: From Functional 45S Ribosomal DNA Organization to Ribosome Assembly Factors.

Authors:  Julio Sáez-Vásquez; Michel Delseny
Journal:  Plant Cell       Date:  2019-06-25       Impact factor: 11.277

Review 5.  IT'S 2 for the price of 1: Multifaceted ITS2 processing machines in RNA and DNA maintenance.

Authors:  Monica C Pillon; Yu-Hua Lo; Robin E Stanley
Journal:  DNA Repair (Amst)       Date:  2019-07-08

6.  A conserved Bcd1 interaction essential for box C/D snoRNP biogenesis.

Authors:  Sohail Khoshnevis; R Elizabeth Dreggors; Tobias F R Hoffmann; Homa Ghalei
Journal:  J Biol Chem       Date:  2019-09-19       Impact factor: 5.157

Review 7.  Ribosome Abundance Control Via the Ubiquitin-Proteasome System and Autophagy.

Authors:  Heeseon An; J Wade Harper
Journal:  J Mol Biol       Date:  2019-06-11       Impact factor: 5.469

8.  The ribosome assembly factor Nop53 controls association of the RNA exosome with pre-60S particles in yeast.

Authors:  Leidy Paola P Cepeda; Felipe F M Bagatelli; Renata M Santos; Marlon D M Santos; Fabio C S Nogueira; Carla C Oliveira
Journal:  J Biol Chem       Date:  2019-10-29       Impact factor: 5.157

Review 9.  Piece by piece: Building a ribozyme.

Authors:  Michael W Gray; Venkat Gopalan
Journal:  J Biol Chem       Date:  2020-01-17       Impact factor: 5.157

10.  Nol9 Is a Spatial Regulator for the Human ITS2 Pre-rRNA Endonuclease-Kinase Complex.

Authors:  Jacob Gordon; Monica C Pillon; Robin E Stanley
Journal:  J Mol Biol       Date:  2019-07-06       Impact factor: 5.469

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