Literature DB >> 25706898

Functions of ribosomal proteins in assembly of eukaryotic ribosomes in vivo.

Jesus de la Cruz1,2, Katrin Karbstein3, John L Woolford4.   

Abstract

The proteome of cells is synthesized by ribosomes, complex ribonucleoproteins that in eukaryotes contain 79-80 proteins and four ribosomal RNAs (rRNAs) more than 5,400 nucleotides long. How these molecules assemble together and how their assembly is regulated in concert with the growth and proliferation of cells remain important unanswered questions. Here, we review recently emerging principles to understand how eukaryotic ribosomal proteins drive ribosome assembly in vivo. Most ribosomal proteins assemble with rRNA cotranscriptionally; their association with nascent particles is strengthened as assembly proceeds. Each subunit is assembled hierarchically by sequential stabilization of their subdomains. The active sites of both subunits are constructed last, perhaps to prevent premature engagement of immature ribosomes with active subunits. Late-assembly intermediates undergo quality-control checks for proper function. Mutations in ribosomal proteins that affect mostly late steps lead to ribosomopathies, diseases that include a spectrum of cell type-specific disorders that often transition from hypoproliferative to hyperproliferative growth.

Entities:  

Keywords:  40S ribosomal subunits; 60S ribosomal subunits; RNA–protein interactions; pre-rRNA processing; rRNA folding; ribosome assembly

Mesh:

Substances:

Year:  2015        PMID: 25706898      PMCID: PMC4772166          DOI: 10.1146/annurev-biochem-060614-033917

Source DB:  PubMed          Journal:  Annu Rev Biochem        ISSN: 0066-4154            Impact factor:   23.643


  176 in total

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2.  The carboxy-terminal extension of yeast ribosomal protein S14 is necessary for maturation of 43S preribosomes.

Authors:  Jelena Jakovljevic; Pamela Antúnez de Mayolo; Tiffany D Miles; Theresa Mai-Ly Nguyen; Isabelle Léger-Silvestre; Nicole Gas; John L Woolford
Journal:  Mol Cell       Date:  2004-05-07       Impact factor: 17.970

3.  Nuclear export of ribosomal 60S subunits by the general mRNA export receptor Mex67-Mtr2.

Authors:  Wei Yao; Daniela Roser; Alwin Köhler; Bettina Bradatsch; Jochen Bassler; Ed Hurt
Journal:  Mol Cell       Date:  2007-04-13       Impact factor: 17.970

4.  Assembly factors Rpf2 and Rrs1 recruit 5S rRNA and ribosomal proteins rpL5 and rpL11 into nascent ribosomes.

Authors:  Jingyu Zhang; Piyanun Harnpicharnchai; Jelena Jakovljevic; Lan Tang; Yurong Guo; Marlene Oeffinger; Michael P Rout; Shawna L Hiley; Timothy Hughes; John L Woolford
Journal:  Genes Dev       Date:  2007-10-15       Impact factor: 11.361

Review 5.  Assembly of bacterial ribosomes.

Authors:  Zahra Shajani; Michael T Sykes; James R Williamson
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

6.  Defining the order in which Nmd3p and Rpl10p load onto nascent 60S ribosomal subunits.

Authors:  Matthew West; John B Hedges; Anthony Chen; Arlen W Johnson
Journal:  Mol Cell Biol       Date:  2005-05       Impact factor: 4.272

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8.  The role of human ribosomal proteins in the maturation of rRNA and ribosome production.

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Journal:  J Biol Chem       Date:  2012-05-08       Impact factor: 5.157

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  141 in total

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Review 2.  Advances in coarse-grained modeling of macromolecular complexes.

Authors:  Alexander J Pak; Gregory A Voth
Journal:  Curr Opin Struct Biol       Date:  2018-11-30       Impact factor: 6.809

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Review 5.  Spatial Organization of Metabolic Enzyme Complexes in Cells.

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6.  Structure and assembly model for the Trypanosoma cruzi 60S ribosomal subunit.

Authors:  Zheng Liu; Cristina Gutierrez-Vargas; Jia Wei; Robert A Grassucci; Madhumitha Ramesh; Noel Espina; Ming Sun; Beril Tutuncuoglu; Susan Madison-Antenucci; John L Woolford; Liang Tong; Joachim Frank
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-10       Impact factor: 11.205

7.  Ribosome-stalk biogenesis is coupled with recruitment of nuclear-export factor to the nascent 60S subunit.

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Journal:  Nat Struct Mol Biol       Date:  2016-10-24       Impact factor: 15.369

8.  A Regulatory Response to Ribosomal Protein Mutations Controls Translation, Growth, and Cell Competition.

Authors:  Chang-Hyun Lee; Marianthi Kiparaki; Jorge Blanco; Virginia Folgado; Zhejun Ji; Amit Kumar; Gerard Rimesso; Nicholas E Baker
Journal:  Dev Cell       Date:  2018-08-02       Impact factor: 12.270

9.  Proteomic and mechanistic dissection of the poxvirus-customized ribosome.

Authors:  Stephen DiGiuseppe; Madeline G Rollins; Helen Astar; Natalia Khalatyan; Jeffrey N Savas; Derek Walsh
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10.  Immature large ribosomal subunits containing the 7S pre-rRNA can engage in translation in Saccharomyces cerevisiae.

Authors:  Olga Rodríguez-Galán; Juan J García-Gómez; Dieter Kressler; Jesús de la Cruz
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

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