Literature DB >> 24190922

Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

John L Woolford1, Susan J Baserga.   

Abstract

Ribosomes are highly conserved ribonucleoprotein nanomachines that translate information in the genome to create the proteome in all cells. In yeast these complex particles contain four RNAs (>5400 nucleotides) and 79 different proteins. During the past 25 years, studies in yeast have led the way to understanding how these molecules are assembled into ribosomes in vivo. Assembly begins with transcription of ribosomal RNA in the nucleolus, where the RNA then undergoes complex pathways of folding, coupled with nucleotide modification, removal of spacer sequences, and binding to ribosomal proteins. More than 200 assembly factors and 76 small nucleolar RNAs transiently associate with assembling ribosomes, to enable their accurate and efficient construction. Following export of preribosomes from the nucleus to the cytoplasm, they undergo final stages of maturation before entering the pool of functioning ribosomes. Elaborate mechanisms exist to monitor the formation of correct structural and functional neighborhoods within ribosomes and to destroy preribosomes that fail to assemble properly. Studies of yeast ribosome biogenesis provide useful models for ribosomopathies, diseases in humans that result from failure to properly assemble ribosomes.

Entities:  

Keywords:  RNA polymerase I; ribosomal RNA; ribosome; ribosome assembly; snoRNAs

Mesh:

Substances:

Year:  2013        PMID: 24190922      PMCID: PMC3813855          DOI: 10.1534/genetics.113.153197

Source DB:  PubMed          Journal:  Genetics        ISSN: 0016-6731            Impact factor:   4.562


  382 in total

1.  A nuclear AAA-type ATPase (Rix7p) is required for biogenesis and nuclear export of 60S ribosomal subunits.

Authors:  O Gadal; D Strauss; J Braspenning; D Hoepfner; E Petfalski; P Philippsen; D Tollervey; E Hurt
Journal:  EMBO J       Date:  2001-07-16       Impact factor: 11.598

2.  Maturation and intranuclear transport of pre-ribosomes requires Noc proteins.

Authors:  P Milkereit; O Gadal; A Podtelejnikov; S Trumtel; N Gas; E Petfalski; D Tollervey; M Mann; E Hurt; H Tschochner
Journal:  Cell       Date:  2001-05-18       Impact factor: 41.582

3.  The Saccharomyces cerevisiae TIF6 gene encoding translation initiation factor 6 is required for 60S ribosomal subunit biogenesis.

Authors:  U Basu; K Si; J R Warner; U Maitra
Journal:  Mol Cell Biol       Date:  2001-03       Impact factor: 4.272

4.  Yeast Rrp9p is an evolutionarily conserved U3 snoRNP protein essential for early pre-rRNA processing cleavages and requires box C for its association.

Authors:  J Venema; H R Vos; A W Faber; W J van Venrooij; H A Raué
Journal:  RNA       Date:  2000-11       Impact factor: 4.942

5.  Nuclear export of 60s ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p.

Authors:  O Gadal; D Strauss; J Kessl; B Trumpower; D Tollervey; E Hurt
Journal:  Mol Cell Biol       Date:  2001-05       Impact factor: 4.272

6.  ERB1, the yeast homolog of mammalian Bop1, is an essential gene required for maturation of the 25S and 5.8S ribosomal RNAs.

Authors:  D G Pestov; M G Stockelman; Z Strezoska; L F Lau
Journal:  Nucleic Acids Res       Date:  2001-09-01       Impact factor: 16.971

7.  Nucleolar protein Nop12p participates in synthesis of 25S rRNA in Saccharomyces cerevisiae.

Authors:  K Wu; P Wu; J P Aris
Journal:  Nucleic Acids Res       Date:  2001-07-15       Impact factor: 16.971

8.  Expression of a micro-protein.

Authors:  X Yu; J R Warner
Journal:  J Biol Chem       Date:  2001-07-12       Impact factor: 5.157

9.  A genomic study of the bipolar bud site selection pattern in Saccharomyces cerevisiae.

Authors:  L Ni; M Snyder
Journal:  Mol Biol Cell       Date:  2001-07       Impact factor: 4.138

10.  The final step in the formation of 25S rRNA in Saccharomyces cerevisiae is performed by 5'-->3' exonucleases.

Authors:  T H Geerlings; J C Vos; H A Raué
Journal:  RNA       Date:  2000-12       Impact factor: 4.942

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  353 in total

1.  Stage-specific assembly events of the 6-MDa small-subunit processome initiate eukaryotic ribosome biogenesis.

Authors:  Malik Chaker-Margot; Mirjam Hunziker; Jonas Barandun; Brian D Dill; Sebastian Klinge
Journal:  Nat Struct Mol Biol       Date:  2015-10-19       Impact factor: 15.369

2.  Chemical modulators of ribosome biogenesis as biological probes.

Authors:  Jonathan M Stokes; Eric D Brown
Journal:  Nat Chem Biol       Date:  2015-11-17       Impact factor: 15.040

3.  Utp14 Recruits and Activates the RNA Helicase Dhr1 To Undock U3 snoRNA from the Preribosome.

Authors:  Jieyi Zhu; Xin Liu; Margarida Anjos; Carl C Correll; Arlen W Johnson
Journal:  Mol Cell Biol       Date:  2016-01-04       Impact factor: 4.272

4.  Motoring toward pre-60S-ribosome export.

Authors:  Vadim Shchepachev; David Tollervey
Journal:  Nat Struct Mol Biol       Date:  2016-01       Impact factor: 15.369

5.  Architecture of the Rix1-Rea1 checkpoint machinery during pre-60S-ribosome remodeling.

Authors:  Clara Barrio-Garcia; Matthias Thoms; Dirk Flemming; Lukas Kater; Otto Berninghausen; Jochen Baßler; Roland Beckmann; Ed Hurt
Journal:  Nat Struct Mol Biol       Date:  2015-11-30       Impact factor: 15.369

Review 6.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

7.  Ribosomes are optimized for autocatalytic production.

Authors:  Shlomi Reuveni; Måns Ehrenberg; Johan Paulsson
Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

8.  Human PDCD2L Is an Export Substrate of CRM1 That Associates with 40S Ribosomal Subunit Precursors.

Authors:  Anne-Marie Landry-Voyer; Sarah Bilodeau; Danny Bergeron; Kiersten L Dionne; Sarah A Port; Caroline Rouleau; François-Michel Boisvert; Ralph H Kehlenbach; François Bachand
Journal:  Mol Cell Biol       Date:  2016-11-28       Impact factor: 4.272

9.  Structural and functional studies of Bud23-Trm112 reveal 18S rRNA N7-G1575 methylation occurs on late 40S precursor ribosomes.

Authors:  Juliette Létoquart; Emmeline Huvelle; Ludivine Wacheul; Gabrielle Bourgeois; Christiane Zorbas; Marc Graille; Valérie Heurgué-Hamard; Denis L J Lafontaine
Journal:  Proc Natl Acad Sci U S A       Date:  2014-12-08       Impact factor: 11.205

Review 10.  Ribosomopathies: Old Concepts, New Controversies.

Authors:  Katherine I Farley-Barnes; Lisa M Ogawa; Susan J Baserga
Journal:  Trends Genet       Date:  2019-07-31       Impact factor: 11.639

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