Literature DB >> 31324529

IT'S 2 for the price of 1: Multifaceted ITS2 processing machines in RNA and DNA maintenance.

Monica C Pillon1, Yu-Hua Lo1, Robin E Stanley2.   

Abstract

Cells utilize sophisticated RNA processing machines to ensure the quality of RNA. Many RNA processing machines have been further implicated in regulating the DNA damage response signifying a strong link between RNA processing and genome maintenance. One of the most intricate and highly regulated RNA processing pathways is the processing of the precursor ribosomal RNA (pre-rRNA), which is paramount for the production of ribosomes. Removal of the Internal Transcribed Spacer 2 (ITS2), located between the 5.8S and 25S rRNA, is one of the most complex steps of ribosome assembly. Processing of the ITS2 is initiated by the newly discovered endoribonuclease Las1, which cleaves at the C2 site within the ITS2, generating products that are further processed by the polynucleotide kinase Grc3, the 5'→3' exonuclease Rat1, and the 3'→5' RNA exosome complex. In addition to their defined roles in ITS2 processing, these critical cellular machines participate in other stages of ribosome assembly, turnover of numerous cellular RNAs, and genome maintenance. Here we summarize recent work defining the molecular mechanisms of ITS2 processing by these essential RNA processing machines and highlight their emerging roles in transcription termination, heterochromatin function, telomere maintenance, and DNA repair. Published by Elsevier B.V.

Entities:  

Keywords:  Endoribonuclease; Exonuclease; Genome maintenance; Grc3; Las1; Polynucleotide kinase; RNA exosome; Rat1/Xrn2; rRNA processing

Mesh:

Substances:

Year:  2019        PMID: 31324529      PMCID: PMC6764878          DOI: 10.1016/j.dnarep.2019.102653

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  162 in total

1.  The nucleation and maintenance of heterochromatin by a histone deacetylase in fission yeast.

Authors:  Takatomi Yamada; Wolfgang Fischle; Tomoyasu Sugiyama; C David Allis; Shiv I S Grewal
Journal:  Mol Cell       Date:  2005-10-28       Impact factor: 17.970

2.  Reconstitution, activities, and structure of the eukaryotic RNA exosome.

Authors:  Quansheng Liu; Jaclyn C Greimann; Christopher D Lima
Journal:  Cell       Date:  2006-12-15       Impact factor: 41.582

3.  Rat1p and Xrn1p are functionally interchangeable exoribonucleases that are restricted to and required in the nucleus and cytoplasm, respectively.

Authors:  A W Johnson
Journal:  Mol Cell Biol       Date:  1997-10       Impact factor: 4.272

4.  Budding yeast RNA polymerases I and II employ parallel mechanisms of transcriptional termination.

Authors:  Junya Kawauchi; Hannah Mischo; Priscilla Braglia; Ana Rondon; Nick J Proudfoot
Journal:  Genes Dev       Date:  2008-04-15       Impact factor: 11.361

5.  Functions of the exosome in rRNA, snoRNA and snRNA synthesis.

Authors:  C Allmang; J Kufel; G Chanfreau; P Mitchell; E Petfalski; D Tollervey
Journal:  EMBO J       Date:  1999-10-01       Impact factor: 11.598

6.  Isolation and characterization of RAT1: an essential gene of Saccharomyces cerevisiae required for the efficient nucleocytoplasmic trafficking of mRNA.

Authors:  D C Amberg; A L Goldstein; C N Cole
Journal:  Genes Dev       Date:  1992-07       Impact factor: 11.361

7.  Rrp47p is an exosome-associated protein required for the 3' processing of stable RNAs.

Authors:  Philip Mitchell; Elisabeth Petfalski; Rym Houalla; Alexandre Podtelejnikov; Matthias Mann; David Tollervey
Journal:  Mol Cell Biol       Date:  2003-10       Impact factor: 4.272

8.  LAS1 is an essential nuclear protein involved in cell morphogenesis and cell surface growth.

Authors:  A I Doseff; K T Arndt
Journal:  Genetics       Date:  1995-11       Impact factor: 4.562

Review 9.  Targeting RNA for processing or destruction by the eukaryotic RNA exosome and its cofactors.

Authors:  John C Zinder; Christopher D Lima
Journal:  Genes Dev       Date:  2017-01-15       Impact factor: 11.361

10.  Comprehensive analysis of the HEPN superfamily: identification of novel roles in intra-genomic conflicts, defense, pathogenesis and RNA processing.

Authors:  Vivek Anantharaman; Kira S Makarova; A Maxwell Burroughs; Eugene V Koonin; L Aravind
Journal:  Biol Direct       Date:  2013-06-15       Impact factor: 4.540

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  4 in total

1.  Eukaryotic Ribosome Biogenesis: The 40S Subunit.

Authors:  A A Moraleva; A S Deryabin; Yu P Rubtsov; M P Rubtsova; O A Dontsova
Journal:  Acta Naturae       Date:  2022 Jan-Mar       Impact factor: 2.204

2.  Changes in genotoxic stress response, ribogenesis and PAP (3'-phosphoadenosine 5'-phosphate) levels are associated with loss of desiccation tolerance in overprimed Medicago truncatula seeds.

Authors:  Andrea Pagano; Lorena Zannino; Paola Pagano; Enrico Doria; Daniele Dondi; Anca Macovei; Marco Biggiogera; Susana de Sousa Araújo; Alma Balestrazzi
Journal:  Plant Cell Environ       Date:  2022-03-08       Impact factor: 7.947

3.  Eukaryotic Ribosome Biogenesis: The 60S Subunit.

Authors:  A A Moraleva; A S Deryabin; Yu P Rubtsov; M P Rubtsova; O A Dontsova
Journal:  Acta Naturae       Date:  2022 Apr-Jun       Impact factor: 2.204

Review 4.  From Snapshots to Flipbook-Resolving the Dynamics of Ribosome Biogenesis with Chemical Probes.

Authors:  Lisa Kofler; Michael Prattes; Helmut Bergler
Journal:  Int J Mol Sci       Date:  2020-04-23       Impact factor: 6.208

  4 in total

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