Literature DB >> 22664983

One core, two shells: bacterial and eukaryotic ribosomes.

Sergey Melnikov1, Adam Ben-Shem, Nicolas Garreau de Loubresse, Lasse Jenner, Gulnara Yusupova, Marat Yusupov.   

Abstract

Ribosomes are universally conserved enzymes that carry out protein biosynthesis. Bacterial and eukaryotic ribosomes, which share an evolutionarily conserved core, are thought to have evolved from a common ancestor by addition of proteins and RNA that bestow different functionalities to ribosomes from different domains of life. Recently, structures of the eukaryotic ribosome, determined by X-ray crystallography, have allowed us to compare these structures to previously determined structures of bacterial ribosomes. Here we describe selected bacteria- or eukaryote-specific structural features of the ribosome and discuss the functional implications of some of them.

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Year:  2012        PMID: 22664983     DOI: 10.1038/nsmb.2313

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN: 1545-9985            Impact factor:   15.369


  84 in total

1.  Architecture of the protein-conducting channel associated with the translating 80S ribosome.

Authors:  R Beckmann; C M Spahn; N Eswar; J Helmers; P A Penczek; A Sali; J Frank; G Blobel
Journal:  Cell       Date:  2001-11-02       Impact factor: 41.582

2.  High resolution structure of the large ribosomal subunit from a mesophilic eubacterium.

Authors:  J Harms; F Schluenzen; R Zarivach; A Bashan; S Gat; I Agmon; H Bartels; F Franceschi; A Yonath
Journal:  Cell       Date:  2001-11-30       Impact factor: 41.582

3.  A snapshot of the 30S ribosomal subunit capturing mRNA via the Shine-Dalgarno interaction.

Authors:  Tatsuya Kaminishi; Daniel N Wilson; Chie Takemoto; Joerg M Harms; Masahito Kawazoe; Frank Schluenzen; Kyoko Hanawa-Suetsugu; Mikako Shirouzu; Paola Fucini; Shigeyuki Yokoyama
Journal:  Structure       Date:  2007-03       Impact factor: 5.006

4.  Structural roles for human translation factor eIF3 in initiation of protein synthesis.

Authors:  Bunpote Siridechadilok; Christopher S Fraser; Richard J Hall; Jennifer A Doudna; Eva Nogales
Journal:  Science       Date:  2005-12-02       Impact factor: 47.728

5.  The tails of ubiquitin precursors are ribosomal proteins whose fusion to ubiquitin facilitates ribosome biogenesis.

Authors:  D Finley; B Bartel; A Varshavsky
Journal:  Nature       Date:  1989-03-30       Impact factor: 49.962

6.  Temperature-dependent regulation of the ribosomal small-subunit protein S21 in the cyanobacterium Anabaena variabilis M3.

Authors:  N Sato; T Tachikawa; A Wada; A Tanaka
Journal:  J Bacteriol       Date:  1997-11       Impact factor: 3.490

Review 7.  Maturation of eukaryotic ribosomes: acquisition of functionality.

Authors:  Vikram Govind Panse; Arlen W Johnson
Journal:  Trends Biochem Sci       Date:  2010-05       Impact factor: 13.807

8.  Yeast ribosomes: variety is the spice of life.

Authors:  Kerri B McIntosh; Jonathan R Warner
Journal:  Cell       Date:  2007-11-02       Impact factor: 41.582

9.  A peptide deformylase-ribosome complex reveals mechanism of nascent chain processing.

Authors:  Rouven Bingel-Erlenmeyer; Rebecca Kohler; Günter Kramer; Arzu Sandikci; Snjezana Antolić; Timm Maier; Christiane Schaffitzel; Brigitte Wiedmann; Bernd Bukau; Nenad Ban
Journal:  Nature       Date:  2008-02-20       Impact factor: 49.962

10.  Comprehensive molecular structure of the eukaryotic ribosome.

Authors:  Derek J Taylor; Batsal Devkota; Andrew D Huang; Maya Topf; Eswar Narayanan; Andrej Sali; Stephen C Harvey; Joachim Frank
Journal:  Structure       Date:  2009-12-09       Impact factor: 5.006

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  163 in total

1.  History of the ribosome and the origin of translation.

Authors:  Anton S Petrov; Burak Gulen; Ashlyn M Norris; Nicholas A Kovacs; Chad R Bernier; Kathryn A Lanier; George E Fox; Stephen C Harvey; Roger M Wartell; Nicholas V Hud; Loren Dean Williams
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-30       Impact factor: 11.205

Review 2.  Paradigms of ribosome synthesis: Lessons learned from ribosomal proteins.

Authors:  Michael Gamalinda; John L Woolford
Journal:  Translation (Austin)       Date:  2015-02-02

Review 3.  Eukaryote-specific extensions in ribosomal proteins of the small subunit: Structure and function.

Authors:  Arnab Ghosh; Anton A Komar
Journal:  Translation (Austin)       Date:  2015-02-05

Review 4.  p53, a translational regulator: contribution to its tumour-suppressor activity.

Authors:  V Marcel; F Catez; J-J Diaz
Journal:  Oncogene       Date:  2015-03-02       Impact factor: 9.867

5.  Charge segregation and low hydrophobicity are key features of ribosomal proteins from different organisms.

Authors:  Daria V Fedyukina; Theodore S Jennaro; Silvia Cavagnero
Journal:  J Biol Chem       Date:  2014-01-07       Impact factor: 5.157

6.  The multiBac protein complex production platform at the EMBL.

Authors:  Imre Berger; Frederic Garzoni; Maxime Chaillet; Matthias Haffke; Kapil Gupta; Alice Aubert
Journal:  J Vis Exp       Date:  2013-07-11       Impact factor: 1.355

7.  Interaction of Streptococcus mutans YidC1 and YidC2 with translating and nontranslating ribosomes.

Authors:  Zht Cheng Wu; Jeanine de Keyzer; Greetje A Berrelkamp-Lahpor; Arnold J M Driessen
Journal:  J Bacteriol       Date:  2013-08-09       Impact factor: 3.490

8.  Ribosomes are optimized for autocatalytic production.

Authors:  Shlomi Reuveni; Måns Ehrenberg; Johan Paulsson
Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

Review 9.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

10.  Communication between RACK1/Asc1 and uS3 (Rps3) is essential for RACK1/Asc1 function in yeast Saccharomyces cerevisiae.

Authors:  Nishant Singh; Supriya Jindal; Arnab Ghosh; Anton A Komar
Journal:  Gene       Date:  2019-05-01       Impact factor: 3.688

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