Literature DB >> 31195016

Ribosome Abundance Control Via the Ubiquitin-Proteasome System and Autophagy.

Heeseon An1, J Wade Harper2.   

Abstract

Ribosomes are central to the life of a cell, as they translate the genetic code into the amino acid language of proteins. Moreover, ribosomal abundance within the cell is coordinated with protein production required for cell function or processes such as cell division. As such, it is not surprising that these elegant machines are both highly regulated at the level of both their output of newly translated proteins but also at the level of ribosomal protein expression, ribosome assembly, and ribosome turnover. In this review, we focus on mechanisms that regulate ribosome abundance through both the ubiquitin-proteasome system and forms of autophagy referred to as "ribophagy." We discussed mechanisms employed in both yeast and mammalian cells, including the various machineries that are important for recognition and degradation of ribosomal components. In addition, we discussed controversies in the field and how the development of new approaches for examining flux through the proteasomal and autophagic systems in the context of a systematic inventory of ribosomal components is necessary to fully understand how ribosome abundance is controlled under various physiological conditions.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  autophagy; degradation; ribosome; ubiquitin

Mesh:

Substances:

Year:  2019        PMID: 31195016      PMCID: PMC6904543          DOI: 10.1016/j.jmb.2019.06.001

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  89 in total

1.  Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease.

Authors:  Claudine Kraft; Anna Deplazes; Marc Sohrmann; Matthias Peter
Journal:  Nat Cell Biol       Date:  2008-04-06       Impact factor: 28.824

2.  A sensitive and quantitative technique for detecting autophagic events based on lysosomal delivery.

Authors:  Hiroyuki Katayama; Takako Kogure; Noboru Mizushima; Tamotsu Yoshimori; Atsushi Miyawaki
Journal:  Chem Biol       Date:  2011-08-26

3.  Global, quantitative and dynamic mapping of protein subcellular localization.

Authors:  Daniel N Itzhak; Stefka Tyanova; Jürgen Cox; Georg Hh Borner
Journal:  Elife       Date:  2016-06-09       Impact factor: 8.140

4.  ZNF598 and RACK1 Regulate Mammalian Ribosome-Associated Quality Control Function by Mediating Regulatory 40S Ribosomal Ubiquitylation.

Authors:  Elayanambi Sundaramoorthy; Marilyn Leonard; Raymond Mak; Jeffrey Liao; Amitkumar Fulzele; Eric J Bennett
Journal:  Mol Cell       Date:  2017-01-26       Impact factor: 17.970

5.  Structure and function of the yeast listerin (Ltn1) conserved N-terminal domain in binding to stalled 60S ribosomal subunits.

Authors:  Selom K Doamekpor; Joong-Won Lee; Nathaniel L Hepowit; Cheng Wu; Clement Charenton; Marilyn Leonard; Mario H Bengtson; Kanagalaghatta R Rajashankar; Matthew S Sachs; Christopher D Lima; Claudio A P Joazeiro
Journal:  Proc Natl Acad Sci U S A       Date:  2016-07-06       Impact factor: 11.205

6.  Deep proteome and transcriptome mapping of a human cancer cell line.

Authors:  Nagarjuna Nagaraj; Jacek R Wisniewski; Tamar Geiger; Juergen Cox; Martin Kircher; Janet Kelso; Svante Pääbo; Matthias Mann
Journal:  Mol Syst Biol       Date:  2011-11-08       Impact factor: 11.429

7.  Systematic analysis of ribophagy in human cells reveals bystander flux during selective autophagy.

Authors:  Heeseon An; J Wade Harper
Journal:  Nat Cell Biol       Date:  2017-12-11       Impact factor: 28.824

8.  Ubiquitination of stalled ribosome triggers ribosome-associated quality control.

Authors:  Yoshitaka Matsuo; Ken Ikeuchi; Yasushi Saeki; Shintaro Iwasaki; Christian Schmidt; Tsuyoshi Udagawa; Fumiya Sato; Hikaru Tsuchiya; Thomas Becker; Keiji Tanaka; Nicholas T Ingolia; Roland Beckmann; Toshifumi Inada
Journal:  Nat Commun       Date:  2017-07-31       Impact factor: 14.919

9.  The Cargo Receptor NDP52 Initiates Selective Autophagy by Recruiting the ULK Complex to Cytosol-Invading Bacteria.

Authors:  Benjamin J Ravenhill; Keith B Boyle; Natalia von Muhlinen; Cara J Ellison; Glenn R Masson; Elsje G Otten; Agnes Foeglein; Roger Williams; Felix Randow
Journal:  Mol Cell       Date:  2019-03-07       Impact factor: 17.970

10.  Global Analysis of Cellular Protein Flux Quantifies the Selectivity of Basal Autophagy.

Authors:  Tian Zhang; Shichen Shen; Jun Qu; Sina Ghaemmaghami
Journal:  Cell Rep       Date:  2016-03-03       Impact factor: 9.423

View more
  16 in total

1.  iRQC, a surveillance pathway for 40S ribosomal quality control during mRNA translation initiation.

Authors:  Danielle M Garshott; Heeseon An; Elayanambi Sundaramoorthy; Marilyn Leonard; Alison Vicary; J Wade Harper; Eric J Bennett
Journal:  Cell Rep       Date:  2021-08-31       Impact factor: 9.423

2.  Destruction or Reconstruction: A Subtle Liaison between the Proteolytic and Signaling Role of Protein Ubiquitination in Spermatogenesis.

Authors:  Giovanna Berruti
Journal:  Adv Exp Med Biol       Date:  2021       Impact factor: 2.622

Review 3.  Ubiquitin and Ubiquitin-Like Proteins and Domains in Ribosome Production and Function: Chance or Necessity?

Authors:  Sara Martín-Villanueva; Gabriel Gutiérrez; Dieter Kressler; Jesús de la Cruz
Journal:  Int J Mol Sci       Date:  2021-04-22       Impact factor: 5.923

Review 4.  The Impact of Oxidative Stress on Ribosomes: From Injury to Regulation.

Authors:  Natalia Shcherbik; Dimitri G Pestov
Journal:  Cells       Date:  2019-11-02       Impact factor: 6.600

5.  Selectivity of mRNA degradation by autophagy in yeast.

Authors:  Shiho Makino; Tomoko Kawamata; Shintaro Iwasaki; Yoshinori Ohsumi
Journal:  Nat Commun       Date:  2021-04-19       Impact factor: 14.919

6.  Metabolic labeling of RNA uncovers the contribution of transcription and decay rates on hypoxia-induced changes in RNA levels.

Authors:  Maria Tiana; Bárbara Acosta-Iborra; Rosana Hernández; Clara Galiana; Miguel Ángel Fernández-Moreno; Benilde Jimenez; Luis Del Peso
Journal:  RNA       Date:  2020-04-15       Impact factor: 4.942

Review 7.  Expanding Role of Ubiquitin in Translational Control.

Authors:  Shannon E Dougherty; Austin O Maduka; Toshifumi Inada; Gustavo M Silva
Journal:  Int J Mol Sci       Date:  2020-02-09       Impact factor: 5.923

8.  Bioinformatics Analysis and RNA-Sequencing of SCAMP3 Expression and Correlated Gene Regulation in Hepatocellular Carcinoma.

Authors:  Shan-Shan Han; Zhi-Qiang Feng; Rui Liu; Jun Ye; Wei-Wei Cheng; Jun-Bo Bao
Journal:  Onco Targets Ther       Date:  2020-02-04       Impact factor: 4.147

Review 9.  Selective Autophagy by Close Encounters of the Ubiquitin Kind.

Authors:  Anna Vainshtein; Paolo Grumati
Journal:  Cells       Date:  2020-10-24       Impact factor: 6.600

10.  E2 ubiquitin-conjugating enzyme UBE2L6 promotes Senecavirus A proliferation by stabilizing the viral RNA polymerase.

Authors:  Liang Li; Juan Bai; Hui Fan; Junfang Yan; Shihai Li; Ping Jiang
Journal:  PLoS Pathog       Date:  2020-10-26       Impact factor: 6.823

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.