Literature DB >> 30209345

Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure.

Olivier Commowick1, Audrey Istace2, Michaël Kain3, Baptiste Laurent4, Florent Leray3, Mathieu Simon3, Sorina Camarasu Pop5, Pascal Girard5, Roxana Améli2, Jean-Christophe Ferré3,6, Anne Kerbrat3,7, Thomas Tourdias8, Frédéric Cervenansky5, Tristan Glatard9, Jérémy Beaumont3, Senan Doyle10, Florence Forbes10,11, Jesse Knight12, April Khademi13, Amirreza Mahbod14, Chunliang Wang14, Richard McKinley15, Franca Wagner15, John Muschelli16, Elizabeth Sweeney16, Eloy Roura17, Xavier Lladó17, Michel M Santos18, Wellington P Santos19, Abel G Silva-Filho18, Xavier Tomas-Fernandez20, Hélène Urien21, Isabelle Bloch21, Sergi Valverde17, Mariano Cabezas17, Francisco Javier Vera-Olmos22, Norberto Malpica22, Charles Guttmann23, Sandra Vukusic2, Gilles Edan3,7, Michel Dojat24, Martin Styner25, Simon K Warfield20, François Cotton2, Christian Barillot3.   

Abstract

We present a study of multiple sclerosis segmentation algorithms conducted at the international MICCAI 2016 challenge. This challenge was operated using a new open-science computing infrastructure. This allowed for the automatic and independent evaluation of a large range of algorithms in a fair and completely automatic manner. This computing infrastructure was used to evaluate thirteen methods of MS lesions segmentation, exploring a broad range of state-of-theart algorithms, against a high-quality database of 53 MS cases coming from four centers following a common definition of the acquisition protocol. Each case was annotated manually by an unprecedented number of seven different experts. Results of the challenge highlighted that automatic algorithms, including the recent machine learning methods (random forests, deep learning, …), are still trailing human expertise on both detection and delineation criteria. In addition, we demonstrate that computing a statistically robust consensus of the algorithms performs closer to human expertise on one score (segmentation) although still trailing on detection scores.

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Year:  2018        PMID: 30209345      PMCID: PMC6135867          DOI: 10.1038/s41598-018-31911-7

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  20 in total

1.  Generalized method for partial volume estimation and tissue segmentation in cerebral magnetic resonance images.

Authors:  April Khademi; Anastasios Venetsanopoulos; Alan R Moody
Journal:  J Med Imaging (Bellingham)       Date:  2014-04-23

Review 2.  OFSEP, a nationwide cohort of people with multiple sclerosis: Consensus minimal MRI protocol.

Authors:  F Cotton; S Kremer; S Hannoun; S Vukusic; V Dousset
Journal:  J Neuroradiol       Date:  2015-02-07       Impact factor: 3.447

3.  A virtual imaging platform for multi-modality medical image simulation.

Authors:  Tristan Glatard; Carole Lartizien; Bernard Gibaud; Rafael Ferreira da Silva; Germain Forestier; Frédéric Cervenansky; Martino Alessandrini; Hugues Benoit-Cattin; Olivier Bernard; Sorina Camarasu-Pop; Nadia Cerezo; Patrick Clarysse; Alban Gaignard; Patrick Hugonnard; Hervé Liebgott; Simon Marache; Adrien Marion; Johan Montagnat; Joachim Tabary; Denis Friboulet
Journal:  IEEE Trans Med Imaging       Date:  2013-01       Impact factor: 10.048

4.  An optimized blockwise nonlocal means denoising filter for 3-D magnetic resonance images.

Authors:  P Coupe; P Yger; S Prima; P Hellier; C Kervrann; C Barillot
Journal:  IEEE Trans Med Imaging       Date:  2008-04       Impact factor: 10.048

Review 5.  The epidemiology of multiple sclerosis in Europe.

Authors:  M Pugliatti; G Rosati; H Carton; T Riise; J Drulovic; L Vécsei; I Milanov
Journal:  Eur J Neurol       Date:  2006-07       Impact factor: 6.089

6.  N4ITK: improved N3 bias correction.

Authors:  Nicholas J Tustison; Brian B Avants; Philip A Cook; Yuanjie Zheng; Alexander Egan; Paul A Yushkevich; James C Gee
Journal:  IEEE Trans Med Imaging       Date:  2010-04-08       Impact factor: 10.048

7.  A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation.

Authors:  Xavier Tomas-Fernandez; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2015-01-19       Impact factor: 10.048

Review 8.  Review of automatic segmentation methods of multiple sclerosis white matter lesions on conventional magnetic resonance imaging.

Authors:  Daniel García-Lorenzo; Simon Francis; Sridar Narayanan; Douglas L Arnold; D Louis Collins
Journal:  Med Image Anal       Date:  2012-09-29       Impact factor: 8.545

9.  Diagnostic criteria for multiple sclerosis: 2010 revisions to the McDonald criteria.

Authors:  Chris H Polman; Stephen C Reingold; Brenda Banwell; Michel Clanet; Jeffrey A Cohen; Massimo Filippi; Kazuo Fujihara; Eva Havrdova; Michael Hutchinson; Ludwig Kappos; Fred D Lublin; Xavier Montalban; Paul O'Connor; Magnhild Sandberg-Wollheim; Alan J Thompson; Emmanuelle Waubant; Brian Weinshenker; Jerry S Wolinsky
Journal:  Ann Neurol       Date:  2011-02       Impact factor: 10.422

10.  volBrain: An Online MRI Brain Volumetry System.

Authors:  José V Manjón; Pierrick Coupé
Journal:  Front Neuroinform       Date:  2016-07-27       Impact factor: 4.081

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  35 in total

Review 1.  A systematic review of the applications of artificial intelligence and machine learning in autoimmune diseases.

Authors:  I S Stafford; M Kellermann; E Mossotto; R M Beattie; B D MacArthur; S Ennis
Journal:  NPJ Digit Med       Date:  2020-03-09

2.  Spatial distribution of multiple sclerosis lesions in the cervical spinal cord.

Authors:  Dominique Eden; Charley Gros; Atef Badji; Sara M Dupont; Benjamin De Leener; Josefina Maranzano; Ren Zhuoquiong; Yaou Liu; Tobias Granberg; Russell Ouellette; Leszek Stawiarz; Jan Hillert; Jason Talbott; Elise Bannier; Anne Kerbrat; Gilles Edan; Pierre Labauge; Virginie Callot; Jean Pelletier; Bertrand Audoin; Henitsoa Rasoanandrianina; Jean-Christophe Brisset; Paola Valsasina; Maria A Rocca; Massimo Filippi; Rohit Bakshi; Shahamat Tauhid; Ferran Prados; Marios Yiannakas; Hugh Kearney; Olga Ciccarelli; Seth A Smith; Constantina Andrada Treaba; Caterina Mainero; Jennifer Lefeuvre; Daniel S Reich; Govind Nair; Timothy M Shepherd; Erik Charlson; Yasuhiko Tachibana; Masaaki Hori; Kouhei Kamiya; Lydia Chougar; Sridar Narayanan; Julien Cohen-Adad
Journal:  Brain       Date:  2019-03-01       Impact factor: 13.501

Review 3.  Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis.

Authors:  Davood Karimi; Haoran Dou; Simon K Warfield; Ali Gholipour
Journal:  Med Image Anal       Date:  2020-06-20       Impact factor: 8.545

4.  Standardized Assessment of Automatic Segmentation of White Matter Hyperintensities and Results of the WMH Segmentation Challenge.

Authors:  Hugo J Kuijf; J Matthijs Biesbroek; Jeroen De Bresser; Rutger Heinen; Simon Andermatt; Mariana Bento; Matt Berseth; Mikhail Belyaev; M Jorge Cardoso; Adria Casamitjana; D Louis Collins; Mahsa Dadar; Achilleas Georgiou; Mohsen Ghafoorian; Dakai Jin; April Khademi; Jesse Knight; Hongwei Li; Xavier Llado; Miguel Luna; Qaiser Mahmood; Richard McKinley; Alireza Mehrtash; Sebastien Ourselin; Bo-Yong Park; Hyunjin Park; Sang Hyun Park; Simon Pezold; Elodie Puybareau; Leticia Rittner; Carole H Sudre; Sergi Valverde; Veronica Vilaplana; Roland Wiest; Yongchao Xu; Ziyue Xu; Guodong Zeng; Jianguo Zhang; Guoyan Zheng; Christopher Chen; Wiesje van der Flier; Frederik Barkhof; Max A Viergever; Geert Jan Biessels
Journal:  IEEE Trans Med Imaging       Date:  2019-03-19       Impact factor: 10.048

Review 5.  Recent advances in the longitudinal segmentation of multiple sclerosis lesions on magnetic resonance imaging: a review.

Authors:  Marcos Diaz-Hurtado; Eloy Martínez-Heras; Elisabeth Solana; Jordi Casas-Roma; Sara Llufriu; Baris Kanber; Ferran Prados
Journal:  Neuroradiology       Date:  2022-07-22       Impact factor: 2.995

6.  Validation of a Denoising Method Using Deep Learning-Based Reconstruction to Quantify Multiple Sclerosis Lesion Load on Fast FLAIR Imaging.

Authors:  T Yamamoto; C Lacheret; H Fukutomi; R A Kamraoui; L Denat; B Zhang; V Prevost; L Zhang; A Ruet; B Triaire; V Dousset; P Coupé; T Tourdias
Journal:  AJNR Am J Neuroradiol       Date:  2022-07-28       Impact factor: 4.966

7.  JOINT SEGMENTATION OF MULTIPLE SCLEROSIS LESIONS AND BRAIN ANATOMY IN MRI SCANS OF ANY CONTRAST AND RESOLUTION WITH CNNs.

Authors:  Benjamin Billot; Stefano Cerri; Koen Van Leemput; Adrian V Dalca; Juan Eugenio Iglesias
Journal:  Proc IEEE Int Symp Biomed Imaging       Date:  2021-05-25

8.  Segmentation-Renormalized Deep Feature Modulation for Unpaired Image Harmonization.

Authors:  Mengwei Ren; Neel Dey; James Fishbaugh; Guido Gerig
Journal:  IEEE Trans Med Imaging       Date:  2021-06-01       Impact factor: 11.037

9.  Investigating efficient CNN architecture for multiple sclerosis lesion segmentation.

Authors:  Alexandre Fenneteau; Pascal Bourdon; David Helbert; Christine Fernandez-Maloigne; Christophe Habas; Rémy Guillevin
Journal:  J Med Imaging (Bellingham)       Date:  2021-02-06

10.  Radius-optimized efficient template matching for lesion detection from brain images.

Authors:  Subhranil Koley; Pranab K Dutta; Iman Aganj
Journal:  Sci Rep       Date:  2021-06-02       Impact factor: 4.379

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