Literature DB >> 32623277

Deep learning with noisy labels: Exploring techniques and remedies in medical image analysis.

Davood Karimi1, Haoran Dou2, Simon K Warfield2, Ali Gholipour2.   

Abstract

Supervised training of deep learning models requires large labeled datasets. There is a growing interest in obtaining such datasets for medical image analysis applications. However, the impact of label noise has not received sufficient attention. Recent studies have shown that label noise can significantly impact the performance of deep learning models in many machine learning and computer vision applications. This is especially concerning for medical applications, where datasets are typically small, labeling requires domain expertise and suffers from high inter- and intra-observer variability, and erroneous predictions may influence decisions that directly impact human health. In this paper, we first review the state-of-the-art in handling label noise in deep learning. Then, we review studies that have dealt with label noise in deep learning for medical image analysis. Our review shows that recent progress on handling label noise in deep learning has gone largely unnoticed by the medical image analysis community. To help achieve a better understanding of the extent of the problem and its potential remedies, we conducted experiments with three medical imaging datasets with different types of label noise, where we investigated several existing strategies and developed new methods to combat the negative effect of label noise. Based on the results of these experiments and our review of the literature, we have made recommendations on methods that can be used to alleviate the effects of different types of label noise on deep models trained for medical image analysis. We hope that this article helps the medical image analysis researchers and developers in choosing and devising new techniques that effectively handle label noise in deep learning.
Copyright © 2020 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Big data; Deep learning; Label noise; Machine learning; Medical image annotation

Mesh:

Year:  2020        PMID: 32623277      PMCID: PMC7484266          DOI: 10.1016/j.media.2020.101759

Source DB:  PubMed          Journal:  Med Image Anal        ISSN: 1361-8415            Impact factor:   8.545


  37 in total

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4.  Deep Learning from Noisy Image Labels with Quality Embedding.

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Journal:  IEEE Trans Image Process       Date:  2018-10-24       Impact factor: 10.856

5.  DeepLesion: automated mining of large-scale lesion annotations and universal lesion detection with deep learning.

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Authors:  Veronika Cheplygina; Marleen de Bruijne; Josien P W Pluim
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8.  Learning from Data with Heterogeneous Noise using SGD.

Authors:  Shuang Song; Kamalika Chaudhuri; Anand D Sarwate
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9.  Asymmetric Loss Functions and Deep Densely Connected Networks for Highly Imbalanced Medical Image Segmentation: Application to Multiple Sclerosis Lesion Detection.

Authors:  Seyed Raein Hashemi; Seyed Sadegh Mohseni Salehi; Deniz Erdogmus; Sanjay P Prabhu; Simon K Warfield; Ali Gholipour
Journal:  IEEE Access       Date:  2018-12-12       Impact factor: 3.367

Review 10.  Opportunities and obstacles for deep learning in biology and medicine.

Authors:  Travers Ching; Daniel S Himmelstein; Brett K Beaulieu-Jones; Alexandr A Kalinin; Brian T Do; Gregory P Way; Enrico Ferrero; Paul-Michael Agapow; Michael Zietz; Michael M Hoffman; Wei Xie; Gail L Rosen; Benjamin J Lengerich; Johnny Israeli; Jack Lanchantin; Stephen Woloszynek; Anne E Carpenter; Avanti Shrikumar; Jinbo Xu; Evan M Cofer; Christopher A Lavender; Srinivas C Turaga; Amr M Alexandari; Zhiyong Lu; David J Harris; Dave DeCaprio; Yanjun Qi; Anshul Kundaje; Yifan Peng; Laura K Wiley; Marwin H S Segler; Simina M Boca; S Joshua Swamidass; Austin Huang; Anthony Gitter; Casey S Greene
Journal:  J R Soc Interface       Date:  2018-04       Impact factor: 4.293

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  31 in total

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Journal:  Sci Rep       Date:  2021-04-16       Impact factor: 4.379

2.  Labeling Noncontrast Head CT Reports for Common Findings Using Natural Language Processing.

Authors:  M Iorga; M Drakopoulos; A M Naidech; A K Katsaggelos; T B Parrish; V B Hill
Journal:  AJNR Am J Neuroradiol       Date:  2022-04-28       Impact factor: 3.825

3.  Technical note: Evaluation of a V-Net autosegmentation algorithm for pediatric CT scans: Performance, generalizability, and application to patient-specific CT dosimetry.

Authors:  Philip M Adamson; Vrunda Bhattbhatt; Sara Principi; Surabhi Beriwal; Linda S Strain; Michael Offe; Adam S Wang; Nghia-Jack Vo; Taly Gilat Schmidt; Petr Jordan
Journal:  Med Phys       Date:  2022-02-22       Impact factor: 4.071

4.  Unleashing the potential of digital pathology data by training computer-aided diagnosis models without human annotations.

Authors:  Niccolò Marini; Stefano Marchesin; Sebastian Otálora; Marek Wodzinski; Alessandro Caputo; Mart van Rijthoven; Witali Aswolinskiy; John-Melle Bokhorst; Damian Podareanu; Edyta Petters; Svetla Boytcheva; Genziana Buttafuoco; Simona Vatrano; Filippo Fraggetta; Jeroen van der Laak; Maristella Agosti; Francesco Ciompi; Gianmaria Silvello; Henning Muller; Manfredo Atzori
Journal:  NPJ Digit Med       Date:  2022-07-22

5.  The Influence of a Coherent Annotation and Synthetic Addition of Lung Nodules for Lung Segmentation in CT Scans.

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Journal:  Sensors (Basel)       Date:  2022-04-30       Impact factor: 3.847

6.  LEARNING TO DETECT BRAIN LESIONS FROM NOISY ANNOTATIONS.

Authors:  Davood Karimi; Jurriaan M Peters; Abdelhakim Ouaalam; Sanjay P Prabhu; Mustafa Sahin; Darcy A Krueger; Alexander Kolevzon; Charis Eng; Simon K Warfield; Ali Gholipour
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7.  Algorithms for segmenting cerebral time-of-flight magnetic resonance angiograms from volunteers and anemic patients.

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8.  Transfer learning in medical image segmentation: New insights from analysis of the dynamics of model parameters and learned representations.

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9.  Learning from crowds in digital pathology using scalable variational Gaussian processes.

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10.  Quantifying Parkinson's disease motor severity under uncertainty using MDS-UPDRS videos.

Authors:  Mandy Lu; Qingyu Zhao; Kathleen L Poston; Edith V Sullivan; Adolf Pfefferbaum; Marian Shahid; Maya Katz; Leila Montaser Kouhsari; Kevin Schulman; Arnold Milstein; Juan Carlos Niebles; Victor W Henderson; Li Fei-Fei; Kilian M Pohl; Ehsan Adeli
Journal:  Med Image Anal       Date:  2021-07-21       Impact factor: 13.828

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