Literature DB >> 26158022

Generalized method for partial volume estimation and tissue segmentation in cerebral magnetic resonance images.

April Khademi1, Anastasios Venetsanopoulos2, Alan R Moody3.   

Abstract

An artifact found in magnetic resonance images (MRI) called partial volume averaging (PVA) has received much attention since accurate segmentation of cerebral anatomy and pathology is impeded by this artifact. Traditional neurological segmentation techniques rely on Gaussian mixture models to handle noise and PVA, or high-dimensional feature sets that exploit redundancy in multispectral datasets. Unfortunately, model-based techniques may not be optimal for images with non-Gaussian noise distributions and/or pathology, and multispectral techniques model probabilities instead of the partial volume (PV) fraction. For robust segmentation, a PV fraction estimation approach is developed for cerebral MRI that does not depend on predetermined intensity distribution models or multispectral scans. Instead, the PV fraction is estimated directly from each image using an adaptively defined global edge map constructed by exploiting a relationship between edge content and PVA. The final PVA map is used to segment anatomy and pathology with subvoxel accuracy. Validation on simulated and real, pathology-free T1 MRI (Gaussian noise), as well as pathological fluid attenuation inversion recovery MRI (non-Gaussian noise), demonstrate that the PV fraction is accurately estimated and the resultant segmentation is robust. Comparison to model-based methods further highlight the benefits of the current approach.

Keywords:  image analysis; magnetic resonance imaging; neuroimaging; partial volume averaging; tissue segmentation

Year:  2014        PMID: 26158022      PMCID: PMC4478860          DOI: 10.1117/1.JMI.1.1.014002

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  17 in total

1.  Magnetic resonance image tissue classification using a partial volume model.

Authors:  D W Shattuck; S R Sandor-Leahy; K A Schaper; D A Rottenberg; R M Leahy
Journal:  Neuroimage       Date:  2001-05       Impact factor: 6.556

2.  A unifying framework for partial volume segmentation of brain MR images.

Authors:  Koen Van Leemput; Frederik Maes; Dirk Vandermeulen; Paul Suetens
Journal:  IEEE Trans Med Imaging       Date:  2003-01       Impact factor: 10.048

3.  Estimation of the partial volume effect in MRI.

Authors:  Miguel Angel González Ballester; Andrew P Zisserman; Michael Brady
Journal:  Med Image Anal       Date:  2002-12       Impact factor: 8.545

4.  Fast and robust parameter estimation for statistical partial volume models in brain MRI.

Authors:  Jussi Tohka; Alex Zijdenbos; Alan Evans
Journal:  Neuroimage       Date:  2004-09       Impact factor: 6.556

5.  Improved estimates of partial volume coefficients from noisy brain MRI using spatial context.

Authors:  José V Manjón; Jussi Tohka; Montserrat Robles
Journal:  Neuroimage       Date:  2010-06-25       Impact factor: 6.556

6.  Edge-based partial volume averaging estimation for FLAIR MRI with white matter lesions.

Authors:  April Khademi; Anastasios Venetsanopoulos; Alan R Moody
Journal:  Annu Int Conf IEEE Eng Med Biol Soc       Date:  2010

7.  Statistical models of partial volume effect.

Authors:  P Santago; H D Gage
Journal:  IEEE Trans Image Process       Date:  1995       Impact factor: 10.856

8.  A nonparametric method for automatic correction of intensity nonuniformity in MRI data.

Authors:  J G Sled; A P Zijdenbos; A C Evans
Journal:  IEEE Trans Med Imaging       Date:  1998-02       Impact factor: 10.048

9.  Statistical validation of image segmentation quality based on a spatial overlap index.

Authors:  Kelly H Zou; Simon K Warfield; Aditya Bharatha; Clare M C Tempany; Michael R Kaus; Steven J Haker; William M Wells; Ferenc A Jolesz; Ron Kikinis
Journal:  Acad Radiol       Date:  2004-02       Impact factor: 3.173

10.  FLAIR histogram segmentation for measurement of leukoaraiosis volume.

Authors:  C R Jack; P C O'Brien; D W Rettman; M M Shiung; Y Xu; R Muthupillai; A Manduca; R Avula; B J Erickson
Journal:  J Magn Reson Imaging       Date:  2001-12       Impact factor: 4.813

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  2 in total

1.  Partial volume model for brain MRI scan using MP2RAGE.

Authors:  Quentin Duché; Hervé Saint-Jalmes; Oscar Acosta; Parnesh Raniga; Pierrick Bourgeat; Vincent Doré; Gary F Egan; Olivier Salvado
Journal:  Hum Brain Mapp       Date:  2017-07-05       Impact factor: 5.038

2.  Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure.

Authors:  Olivier Commowick; Audrey Istace; Michaël Kain; Baptiste Laurent; Florent Leray; Mathieu Simon; Sorina Camarasu Pop; Pascal Girard; Roxana Améli; Jean-Christophe Ferré; Anne Kerbrat; Thomas Tourdias; Frédéric Cervenansky; Tristan Glatard; Jérémy Beaumont; Senan Doyle; Florence Forbes; Jesse Knight; April Khademi; Amirreza Mahbod; Chunliang Wang; Richard McKinley; Franca Wagner; John Muschelli; Elizabeth Sweeney; Eloy Roura; Xavier Lladó; Michel M Santos; Wellington P Santos; Abel G Silva-Filho; Xavier Tomas-Fernandez; Hélène Urien; Isabelle Bloch; Sergi Valverde; Mariano Cabezas; Francisco Javier Vera-Olmos; Norberto Malpica; Charles Guttmann; Sandra Vukusic; Gilles Edan; Michel Dojat; Martin Styner; Simon K Warfield; François Cotton; Christian Barillot
Journal:  Sci Rep       Date:  2018-09-12       Impact factor: 4.379

  2 in total

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