Literature DB >> 25616008

A Model of Population and Subject (MOPS) Intensities With Application to Multiple Sclerosis Lesion Segmentation.

Xavier Tomas-Fernandez, Simon K Warfield.   

Abstract

White matter (WM) lesions are thought to play an important role in multiple sclerosis (MS) disease burden. Recent work in the automated segmentation of white matter lesions from magnetic resonance imaging has utilized a model in which lesions are outliers in the distribution of tissue signal intensities across the entire brain of each patient. However, the sensitivity and specificity of lesion detection and segmentation with these approaches have been inadequate. In our analysis, we determined this is due to the substantial overlap between the whole brain signal intensity distribution of lesions and normal tissue. Inspired by the ability of experts to detect lesions based on their local signal intensity characteristics, we propose a new algorithm that achieves lesion and brain tissue segmentation through simultaneous estimation of a spatially global within-the-subject intensity distribution and a spatially local intensity distribution derived from a healthy reference population. We demonstrate that MS lesions can be segmented as outliers from this intensity model of population and subject. We carried out extensive experiments with both synthetic and clinical data, and compared the performance of our new algorithm to those of state-of-the art techniques. We found this new approach leads to a substantial improvement in the sensitivity and specificity of lesion detection and segmentation.

Entities:  

Mesh:

Year:  2015        PMID: 25616008      PMCID: PMC4506921          DOI: 10.1109/TMI.2015.2393853

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  44 in total

1.  Automated segmentation of multiple sclerosis lesion subtypes with multichannel MRI.

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Journal:  Neuroimage       Date:  2006-06-22       Impact factor: 6.556

2.  Adaptive segmentation of MRI data.

Authors:  W M Wells; W L Grimson; R Kikinis; F A Jolesz
Journal:  IEEE Trans Med Imaging       Date:  1996       Impact factor: 10.048

3.  The evolution of multiple sclerosis lesions on serial MR.

Authors:  C R Guttmann; S S Ahn; L Hsu; R Kikinis; F A Jolesz
Journal:  AJNR Am J Neuroradiol       Date:  1995-08       Impact factor: 3.825

4.  Automated delineation of white matter fiber tracts with a multiple region-of-interest approach.

Authors:  Ralph O Suarez; Olivier Commowick; Sanjay P Prabhu; Simon K Warfield
Journal:  Neuroimage       Date:  2011-11-27       Impact factor: 6.556

5.  Simultaneous truth and performance level estimation through fusion of probabilistic segmentations.

Authors:  Alireza Akhondi-Asl; Simon K Warfield
Journal:  IEEE Trans Med Imaging       Date:  2013-06-04       Impact factor: 10.048

6.  Automatic identification of gray matter structures from MRI to improve the segmentation of white matter lesions.

Authors:  S Warfield; J Dengler; J Zaers; C R Guttmann; W M Wells; G J Ettinger; J Hiller; R Kikinis
Journal:  J Image Guid Surg       Date:  1995

7.  Regional magnetic resonance imaging lesion burden and cognitive function in multiple sclerosis: a longitudinal study.

Authors:  R A Sperling; C R Guttmann; M J Hohol; S K Warfield; M Jakab; M Parente; E L Diamond; K R Daffner; M J Olek; E J Orav; R Kikinis; F A Jolesz; H L Weiner
Journal:  Arch Neurol       Date:  2001-01

8.  Quantification of MRI lesion load in multiple sclerosis: a comparison of three computer-assisted techniques.

Authors:  J Grimaud; M Lai; J Thorpe; P Adeleine; L Wang; G J Barker; D L Plummer; P S Tofts; W I McDonald; D H Miller
Journal:  Magn Reson Imaging       Date:  1996       Impact factor: 2.546

9.  Dirty-appearing white matter in multiple sclerosis: preliminary observations of myelin phospholipid and axonal loss.

Authors:  G R W Moore; C Laule; A Mackay; E Leung; D K B Li; G Zhao; A L Traboulsee; D W Paty
Journal:  J Neurol       Date:  2008-09-24       Impact factor: 4.849

10.  Multiple sclerosis.

Authors:  Alastair Compston; Alasdair Coles
Journal:  Lancet       Date:  2008-10-25       Impact factor: 79.321

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  15 in total

1.  Longitudinal multiple sclerosis lesion segmentation: Resource and challenge.

Authors:  Aaron Carass; Snehashis Roy; Amod Jog; Jennifer L Cuzzocreo; Elizabeth Magrath; Adrian Gherman; Julia Button; James Nguyen; Ferran Prados; Carole H Sudre; Manuel Jorge Cardoso; Niamh Cawley; Olga Ciccarelli; Claudia A M Wheeler-Kingshott; Sébastien Ourselin; Laurence Catanese; Hrishikesh Deshpande; Pierre Maurel; Olivier Commowick; Christian Barillot; Xavier Tomas-Fernandez; Simon K Warfield; Suthirth Vaidya; Abhijith Chunduru; Ramanathan Muthuganapathy; Ganapathy Krishnamurthi; Andrew Jesson; Tal Arbel; Oskar Maier; Heinz Handels; Leonardo O Iheme; Devrim Unay; Saurabh Jain; Diana M Sima; Dirk Smeets; Mohsen Ghafoorian; Bram Platel; Ariel Birenbaum; Hayit Greenspan; Pierre-Louis Bazin; Peter A Calabresi; Ciprian M Crainiceanu; Lotta M Ellingsen; Daniel S Reich; Jerry L Prince; Dzung L Pham
Journal:  Neuroimage       Date:  2017-01-11       Impact factor: 6.556

2.  Automated Segmentation of Tissues Using CT and MRI: A Systematic Review.

Authors:  Leon Lenchik; Laura Heacock; Ashley A Weaver; Robert D Boutin; Tessa S Cook; Jason Itri; Christopher G Filippi; Rao P Gullapalli; James Lee; Marianna Zagurovskaya; Tara Retson; Kendra Godwin; Joey Nicholson; Ponnada A Narayana
Journal:  Acad Radiol       Date:  2019-08-10       Impact factor: 3.173

3.  Comparing fully automated state-of-the-art cerebellum parcellation from magnetic resonance images.

Authors:  Aaron Carass; Jennifer L Cuzzocreo; Shuo Han; Carlos R Hernandez-Castillo; Paul E Rasser; Melanie Ganz; Vincent Beliveau; Jose Dolz; Ismail Ben Ayed; Christian Desrosiers; Benjamin Thyreau; José E Romero; Pierrick Coupé; José V Manjón; Vladimir S Fonov; D Louis Collins; Sarah H Ying; Chiadi U Onyike; Deana Crocetti; Bennett A Landman; Stewart H Mostofsky; Paul M Thompson; Jerry L Prince
Journal:  Neuroimage       Date:  2018-08-09       Impact factor: 6.556

4.  Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging.

Authors:  Jurriaan M Peters; Anna K Prohl; Xavier K Tomas-Fernandez; Maxime Taquet; Benoit Scherrer; Sanjay P Prabhu; Hart G Lidov; Jolene M Singh; Floor E Jansen; Kees P J Braun; Mustafa Sahin; Simon K Warfield; Aymeric Stamm
Journal:  Neurology       Date:  2015-10-02       Impact factor: 9.910

5.  Automated Detection and Segmentation of Multiple Sclerosis Lesions Using Ultra-High-Field MP2RAGE.

Authors:  Mário João Fartaria; Pascal Sati; Alexandra Todea; Ernst-Wilhelm Radue; Reza Rahmanzadeh; Kieran OʼBrien; Daniel S Reich; Meritxell Bach Cuadra; Tobias Kober; Cristina Granziera
Journal:  Invest Radiol       Date:  2019-06       Impact factor: 6.016

6.  Multiple Sclerosis Lesions Segmentation Using Attention-Based CNNs in FLAIR Images.

Authors:  Mehdi Sadeghibakhi; Hamidreza Pourreza; Hamidreza Mahyar
Journal:  IEEE J Transl Eng Health Med       Date:  2022-05-02

7.  Objective Evaluation of Multiple Sclerosis Lesion Segmentation using a Data Management and Processing Infrastructure.

Authors:  Olivier Commowick; Audrey Istace; Michaël Kain; Baptiste Laurent; Florent Leray; Mathieu Simon; Sorina Camarasu Pop; Pascal Girard; Roxana Améli; Jean-Christophe Ferré; Anne Kerbrat; Thomas Tourdias; Frédéric Cervenansky; Tristan Glatard; Jérémy Beaumont; Senan Doyle; Florence Forbes; Jesse Knight; April Khademi; Amirreza Mahbod; Chunliang Wang; Richard McKinley; Franca Wagner; John Muschelli; Elizabeth Sweeney; Eloy Roura; Xavier Lladó; Michel M Santos; Wellington P Santos; Abel G Silva-Filho; Xavier Tomas-Fernandez; Hélène Urien; Isabelle Bloch; Sergi Valverde; Mariano Cabezas; Francisco Javier Vera-Olmos; Norberto Malpica; Charles Guttmann; Sandra Vukusic; Gilles Edan; Michel Dojat; Martin Styner; Simon K Warfield; François Cotton; Christian Barillot
Journal:  Sci Rep       Date:  2018-09-12       Impact factor: 4.379

8.  Dice Overlap Measures for Objects of Unknown Number: Application to Lesion Segmentation.

Authors:  Ipek Oguz; Aaron Carass; Dzung L Pham; Snehashis Roy; Nagesh Subbana; Peter A Calabresi; Paul A Yushkevich; Russell T Shinohara; Jerry L Prince
Journal:  Brainlesion       Date:  2018-02-17

9.  Rotation-invariant multi-contrast non-local means for MS lesion segmentation.

Authors:  Nicolas Guizard; Pierrick Coupé; Vladimir S Fonov; Jose V Manjón; Douglas L Arnold; D Louis Collins
Journal:  Neuroimage Clin       Date:  2015-05-13       Impact factor: 4.881

10.  Radius-optimized efficient template matching for lesion detection from brain images.

Authors:  Subhranil Koley; Pranab K Dutta; Iman Aganj
Journal:  Sci Rep       Date:  2021-06-02       Impact factor: 4.379

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