Literature DB >> 30206780

Direct amide 15N to 13C transfers for solid-state assignment experiments in deuterated proteins.

Alons Lends1, Francesco Ravotti1, Giorgia Zandomeneghi1, Anja Böckmann2, Matthias Ernst3, Beat H Meier4.   

Abstract

The assignment of protein backbone and side-chain NMR chemical shifts is the first step towards the characterization of protein structure. The recent introduction of proton detection in combination with fast MAS has opened up novel opportunities for assignment experiments. However, typical 3D sequential-assignment experiments using proton detection under fast MAS lead to signal intensities much smaller than the theoretically expected ones due to the low transfer efficiency of some of the steps. Here, we present a selective 3D experiment for deuterated and (amide) proton back-exchanged proteins where polarization is directly transferred from backbone nitrogen to selected backbone or sidechain carbons. The proposed pulse sequence uses only 1H-15N cross-polarization (CP) transfers, which are, for deuterated proteins, about 30% more efficient than 1H-13C CP transfers, and employs a dipolar version of the INEPT experiment for N-C transfer. By avoiding HN-C (HN stands for amide protons) and C-C CP transfers, we could achieve higher selectivity and increased signal intensities compared to other pulse sequences containing long-range CP transfers. The REDOR transfer is designed with an additional selective π pulse, which enables the selective transfer of the polarization to the desired 13C spins.

Entities:  

Keywords:  MAS; Magnetisation transfer; Proteins; Solid-state NMR

Mesh:

Substances:

Year:  2018        PMID: 30206780     DOI: 10.1007/s10858-018-0207-0

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  41 in total

1.  Access to side-chain carbon information in deuterated solids under fast MAS through non-rotor-synchronized mixing.

Authors:  Natalia Kulminskaya; Suresh Kumar Vasa; Karin Giller; Stefan Becker; Ann Kwan; Margaret Sunde; Rasmus Linser
Journal:  Chem Commun (Camb)       Date:  2015-11-06       Impact factor: 6.222

2.  Backbone assignment for minimal protein amounts of low structural homogeneity in the absence of deuteration.

Authors:  ShengQi Xiang; Jacek Biernat; Eckhard Mandelkow; Stefan Becker; Rasmus Linser
Journal:  Chem Commun (Camb)       Date:  2016-03-14       Impact factor: 6.222

3.  Characterization of different water pools in solid-state NMR protein samples.

Authors:  Anja Böckmann; Carole Gardiennet; René Verel; Andreas Hunkeler; Antoine Loquet; Guido Pintacuda; Lyndon Emsley; Beat H Meier; Anne Lesage
Journal:  J Biomol NMR       Date:  2009-11       Impact factor: 2.835

4.  Side-chain to backbone correlations from solid-state NMR of perdeuterated proteins through combined excitation and long-range magnetization transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-08-07       Impact factor: 2.835

5.  De novo 3D structure determination from sub-milligram protein samples by solid-state 100 kHz MAS NMR spectroscopy.

Authors:  Vipin Agarwal; Susanne Penzel; Kathrin Szekely; Riccardo Cadalbert; Emilie Testori; Andres Oss; Jaan Past; Ago Samoson; Matthias Ernst; Anja Böckmann; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-09-15       Impact factor: 15.336

6.  Proton-detected MAS NMR experiments based on dipolar transfers for backbone assignment of highly deuterated proteins.

Authors:  Veniamin Chevelkov; Birgit Habenstein; Antoine Loquet; Karin Giller; Stefan Becker; Adam Lange
Journal:  J Magn Reson       Date:  2014-03-04       Impact factor: 2.229

7.  Characterization of fibril dynamics on three timescales by solid-state NMR.

Authors:  Albert A Smith; Emilie Testori; Riccardo Cadalbert; Beat H Meier; Matthias Ernst
Journal:  J Biomol NMR       Date:  2016-07-16       Impact factor: 2.835

8.  Cell-free expression, purification, and membrane reconstitution for NMR studies of the nonstructural protein 4B from hepatitis C virus.

Authors:  Marie-Laure Fogeron; Vlastimil Jirasko; Susanne Penzel; David Paul; Roland Montserret; Clément Danis; Denis Lacabanne; Aurélie Badillo; Jérôme Gouttenoire; Darius Moradpour; Ralf Bartenschlager; François Penin; Beat H Meier; Anja Böckmann
Journal:  J Biomol NMR       Date:  2016-05-27       Impact factor: 2.835

9.  Atomic-resolution three-dimensional structure of amyloid β fibrils bearing the Osaka mutation.

Authors:  Anne K Schütz; Toni Vagt; Matthias Huber; Oxana Y Ovchinnikova; Riccardo Cadalbert; Joseph Wall; Peter Güntert; Anja Böckmann; Rudi Glockshuber; Beat H Meier
Journal:  Angew Chem Int Ed Engl       Date:  2014-11-13       Impact factor: 15.336

10.  Proton-Based Structural Analysis of a Heptahelical Transmembrane Protein in Lipid Bilayers.

Authors:  Daniela Lalli; Matthew N Idso; Loren B Andreas; Sunyia Hussain; Naomi Baxter; Songi Han; Bradley F Chmelka; Guido Pintacuda
Journal:  J Am Chem Soc       Date:  2017-08-11       Impact factor: 15.419

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  2 in total

Review 1.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

Authors:  Tanguy Le Marchand; Tobias Schubeis; Marta Bonaccorsi; Piotr Paluch; Daniela Lalli; Andrew J Pell; Loren B Andreas; Kristaps Jaudzems; Jan Stanek; Guido Pintacuda
Journal:  Chem Rev       Date:  2022-05-10       Impact factor: 72.087

2.  Transferred-Rotational-Echo Double Resonance.

Authors:  Xizhou Cecily Zhang; Marcel C Forster; Evgeny Nimerovsky; Kumar Tekwani Movellan; Loren B Andreas
Journal:  J Phys Chem A       Date:  2021-01-19       Impact factor: 2.781

  2 in total

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