Literature DB >> 21822966

Side-chain to backbone correlations from solid-state NMR of perdeuterated proteins through combined excitation and long-range magnetization transfers.

Rasmus Linser1.   

Abstract

Proteins with excessive deuteration give access to proton detected solid-state NMR spectra of extraordinary resolution and sensitivity. The high spectral quality achieved after partial proton back-exchange has been shown to start a new era for backbone assignment, protein structure elucidation, characterization of protein dynamics, and access to protein parts undergoing motion. The large absence of protons at non-exchangeable sites, however, poses a serious hurdle for characterization of side chains, which play an important role especially for structural understanding of the protein core and the investigation of protein-protein and protein-ligand interactions, e.g. This has caused the perdeuteration approach to almost exclusively be amenable to backbone characterization only. In this work it is shown that a combination of isotropic (13)C mixing with long-range (1)H/(13)C magnetization transfers can be used effectively to also access complete sets of side-chain chemical shifts in perdeuterated proteins and correlate these with the protein backbone with high unambiguity and resolution. COmbined POlarization from long-Range transfers And Direct Excitation (COPORADE) allows this strategy to yield complete sets of aliphatic amino acid resonances with reasonable sensitivity. © Springer Science+Business Media B.V. 2011

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Year:  2011        PMID: 21822966     DOI: 10.1007/s10858-011-9531-3

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  30 in total

1.  Adiabatic TOBSY in rotating solids.

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2.  Narrow carbonyl resonances in proton-diluted proteins facilitate NMR assignments in the solid-state.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Biomol NMR       Date:  2010-03-16       Impact factor: 2.835

3.  Assignment of dynamic regions in biological solids enabled by spin-state selective NMR experiments.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-07-07       Impact factor: 15.419

4.  High resolution 1H-detected solid-state NMR spectroscopy of protein aliphatic resonances: access to tertiary structure information.

Authors:  Sam Asami; Peter Schmieder; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-11-03       Impact factor: 15.419

5.  Toxin-induced conformational changes in a potassium channel revealed by solid-state NMR.

Authors:  Adam Lange; Karin Giller; Sönke Hornig; Marie-France Martin-Eauclaire; Olaf Pongs; Stefan Becker; Marc Baldus
Journal:  Nature       Date:  2006-04-13       Impact factor: 49.962

6.  Homonuclear mixing sequences for perdeuterated proteins.

Authors:  Kuo-Ying Huang; Ansgar B Siemer; Ann E McDermott
Journal:  J Magn Reson       Date:  2010-10-26       Impact factor: 2.229

7.  Residual methyl protonation in perdeuterated proteins for multi-dimensional correlation experiments in MAS solid-state NMR spectroscopy.

Authors:  Vipin Agarwal; Bernd Reif
Journal:  J Magn Reson       Date:  2008-06-20       Impact factor: 2.229

8.  Probing surface accessibility of proteins using paramagnetic relaxation in solid-state NMR spectroscopy.

Authors:  Rasmus Linser; Uwe Fink; Bernd Reif
Journal:  J Am Chem Soc       Date:  2009-09-30       Impact factor: 15.419

9.  Identification of hydroxyl protons, determination of their exchange dynamics, and characterization of hydrogen bonding in a microcrystallin protein.

Authors:  Vipin Agarwal; Rasmus Linser; Uwe Fink; Katja Faelber; Bernd Reif
Journal:  J Am Chem Soc       Date:  2010-03-10       Impact factor: 15.419

10.  1H-15N correlation spectroscopy of nanocrystalline proteins.

Authors:  Corey R Morcombe; Eric K Paulson; Vadim Gaponenko; R Andrew Byrd; Kurt W Zilm
Journal:  J Biomol NMR       Date:  2005-03       Impact factor: 2.835

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  11 in total

1.  Backbone assignment of perdeuterated proteins using long-range H/C-dipolar transfers.

Authors:  Rasmus Linser
Journal:  J Biomol NMR       Date:  2011-12-14       Impact factor: 2.835

2.  Asynchronous through-bond homonuclear isotropic mixing: application to carbon-carbon transfer in perdeuterated proteins under MAS.

Authors:  Natalia Kulminskaya; Suresh Kumar Vasa; Karin Giller; Stefan Becker; Rasmus Linser
Journal:  J Biomol NMR       Date:  2015-08-30       Impact factor: 2.835

3.  Out-and-back 13C-13C scalar transfers in protein resonance assignment by proton-detected solid-state NMR under ultra-fast MAS.

Authors:  Emeline Barbet-Massin; Andrew J Pell; Kristaps Jaudzems; W Trent Franks; Joren S Retel; Svetlana Kotelovica; Inara Akopjana; Kaspars Tars; Lyndon Emsley; Hartmut Oschkinat; Anne Lesage; Guido Pintacuda
Journal:  J Biomol NMR       Date:  2013-06-29       Impact factor: 2.835

4.  Solid state NMR of proteins at high MAS frequencies: symmetry-based mixing and simultaneous acquisition of chemical shift correlation spectra.

Authors:  Peter Bellstedt; Christian Herbst; Sabine Häfner; Jörg Leppert; Matthias Görlach; Ramadurai Ramachandran
Journal:  J Biomol NMR       Date:  2012-11-23       Impact factor: 2.835

Review 5.  1H-Detected Biomolecular NMR under Fast Magic-Angle Spinning.

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6.  High-resolution proton CRAMPS NMR using narrowband analog filters and postponed data acquisition.

Authors:  Liying Wang; Donghua H Zhou
Journal:  J Magn Reson       Date:  2013-06-29       Impact factor: 2.229

7.  Direct amide 15N to 13C transfers for solid-state assignment experiments in deuterated proteins.

Authors:  Alons Lends; Francesco Ravotti; Giorgia Zandomeneghi; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2018-09-11       Impact factor: 2.835

8.  Solid-state NMR structure determination from diagonal-compensated, sparsely nonuniform-sampled 4D proton-proton restraints.

Authors:  Rasmus Linser; Benjamin Bardiaux; Loren B Andreas; Sven G Hyberts; Vanessa K Morris; Guido Pintacuda; Margaret Sunde; Ann H Kwan; Gerhard Wagner
Journal:  J Am Chem Soc       Date:  2014-07-25       Impact factor: 15.419

9.  Transferred-Rotational-Echo Double Resonance.

Authors:  Xizhou Cecily Zhang; Marcel C Forster; Evgeny Nimerovsky; Kumar Tekwani Movellan; Loren B Andreas
Journal:  J Phys Chem A       Date:  2021-01-19       Impact factor: 2.781

10.  Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional 1H-detected solid-state NMR.

Authors:  Alexander Klein; Petra Rovó; Varun V Sakhrani; Yangyang Wang; Jacob B Holmes; Viktoriia Liu; Patricia Skowronek; Laura Kukuk; Suresh K Vasa; Peter Güntert; Leonard J Mueller; Rasmus Linser
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 11.205

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