Literature DB >> 31951864

Sensitivity boosts by the CPMAS CryoProbe for challenging biological assemblies.

Alia Hassan1, Caitlin M Quinn2, Jochem Struppe3, Ivan V Sergeyev3, Chunting Zhang2, Changmiao Guo2, Brent Runge4, Theint Theint5, Hanh H Dao5, Christopher P Jaroniec5, Mélanie Berbon6, Alons Lends6, Birgit Habenstein6, Antoine Loquet6, Rainer Kuemmerle7, Barbara Perrone8, Angela M Gronenborn9, Tatyana Polenova10.   

Abstract

Despite breakthroughs in MAS NMR hardware and experimental methodologies, sensitivity remains a major challenge for large and complex biological systems. Here, we report that 3-4 fold higher sensitivities can be obtained in heteronuclear-detected experiments, using a novel HCN CPMAS probe, where the sample coil and the electronics operate at cryogenic temperatures, while the sample is maintained at ambient temperatures (BioSolids CryoProbe™). Such intensity enhancements permit recording 2D and 3D experiments that are otherwise time-prohibitive, such as 2D 15N-15N proton-driven spin diffusion and 15N-13C double cross polarization to natural abundance carbon experiments. The benefits of CPMAS CryoProbe-based experiments are illustrated for assemblies of kinesin Kif5b with microtubules, HIV-1 capsid protein assemblies, and fibrils of human Y145Stop and fungal HET-s prion proteins - demanding systems for conventional MAS solid-state NMR and excellent reference systems in terms of spectral quality. We envision that this probe technology will be beneficial for a wide range of applications, especially for biological systems suffering from low intrinsic sensitivity and at physiological temperatures.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biological assemblies; CryoProbe; MAS NMR; Magic angle spinning

Mesh:

Substances:

Year:  2019        PMID: 31951864      PMCID: PMC7060763          DOI: 10.1016/j.jmr.2019.106680

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  28 in total

1.  Magic angle spinning NMR reveals sequence-dependent structural plasticity, dynamics, and the spacer peptide 1 conformation in HIV-1 capsid protein assemblies.

Authors:  Yun Han; Guangjin Hou; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Andrew S Lipton; Sarah Burton; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; David Rice; Angela M Gronenborn; Tatyana Polenova
Journal:  J Am Chem Soc       Date:  2013-11-13       Impact factor: 15.419

2.  Sensitivity of nonuniform sampling NMR.

Authors:  Melissa R Palmer; Christopher L Suiter; Geneive E Henry; James Rovnyak; Jeffrey C Hoch; Tatyana Polenova; David Rovnyak
Journal:  J Phys Chem B       Date:  2015-05-18       Impact factor: 2.991

Review 3.  Principles for Integrative Structural Biology Studies.

Authors:  Michael P Rout; Andrej Sali
Journal:  Cell       Date:  2019-05-30       Impact factor: 41.582

4.  13C and 15N chemical shift assignments of mammalian Y145Stop prion protein amyloid fibrils.

Authors:  Theint Theint; Philippe S Nadaud; Krystyna Surewicz; Witold K Surewicz; Christopher P Jaroniec
Journal:  Biomol NMR Assign       Date:  2016-12-21       Impact factor: 0.746

5.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

6.  Conformational Dynamics in the Core of Human Y145Stop Prion Protein Amyloid Probed by Relaxation Dispersion NMR.

Authors:  Matthew D Shannon; Theint Theint; Dwaipayan Mukhopadhyay; Krystyna Surewicz; Witold K Surewicz; Dominique Marion; Paul Schanda; Christopher P Jaroniec
Journal:  Chemphyschem       Date:  2018-11-07       Impact factor: 3.102

7.  Amyloid fibrils of the HET-s(218-289) prion form a beta solenoid with a triangular hydrophobic core.

Authors:  Christian Wasmer; Adam Lange; Hélène Van Melckebeke; Ansgar B Siemer; Roland Riek; Beat H Meier
Journal:  Science       Date:  2008-03-14       Impact factor: 47.728

Review 8.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018

9.  Dynamic allostery governs cyclophilin A-HIV capsid interplay.

Authors:  Manman Lu; Guangjin Hou; Huilan Zhang; Christopher L Suiter; Jinwoo Ahn; In-Ja L Byeon; Juan R Perilla; Christopher J Langmead; Ivan Hung; Peter L Gor'kov; Zhehong Gan; William Brey; Christopher Aiken; Peijun Zhang; Klaus Schulten; Angela M Gronenborn; Tatyana Polenova
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-09       Impact factor: 11.205

10.  Spinning faster: protein NMR at MAS frequencies up to 126 kHz.

Authors:  Susanne Penzel; Andres Oss; Mai-Liis Org; Ago Samoson; Anja Böckmann; Matthias Ernst; Beat H Meier
Journal:  J Biomol NMR       Date:  2019-01-24       Impact factor: 2.835

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  8 in total

Review 1.  High-resolution probing of early events in amyloid-β aggregation related to Alzheimer's disease.

Authors:  Bikash R Sahoo; Sarah J Cox; Ayyalusamy Ramamoorthy
Journal:  Chem Commun (Camb)       Date:  2020-04-17       Impact factor: 6.222

2.  Epitope Mapping and Binding Assessment by Solid-State NMR Provide a Way for the Development of Biologics under the Quality by Design Paradigm.

Authors:  Domenico Rizzo; Linda Cerofolini; Stefano Giuntini; Luisa Iozzino; Carlo Pergola; Francesca Sacco; Angelo Palmese; Enrico Ravera; Claudio Luchinat; Fabio Baroni; Marco Fragai
Journal:  J Am Chem Soc       Date:  2022-05-26       Impact factor: 16.383

3.  Mechanistic Insights into the Structural Stability of Collagen-Containing Biomaterials Such as Bones and Cartilage.

Authors:  Nidhi Tiwari; Sungsool Wi; Frederic Mentink-Vigier; Neeraj Sinha
Journal:  J Phys Chem B       Date:  2021-04-30       Impact factor: 2.991

4.  Imaging active site chemistry and protonation states: NMR crystallography of the tryptophan synthase α-aminoacrylate intermediate.

Authors:  Jacob B Holmes; Viktoriia Liu; Bethany G Caulkins; Eduardo Hilario; Rittik K Ghosh; Victoria N Drago; Robert P Young; Jennifer A Romero; Adam D Gill; Paul M Bogie; Joana Paulino; Xiaoling Wang; Gwladys Riviere; Yuliana K Bosken; Jochem Struppe; Alia Hassan; Jevgeni Guidoulianov; Barbara Perrone; Frederic Mentink-Vigier; Chia-En A Chang; Joanna R Long; Richard J Hooley; Timothy C Mueser; Michael F Dunn; Leonard J Mueller
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-11       Impact factor: 11.205

Review 5.  Emerging Contributions of Solid-State NMR Spectroscopy to Chromatin Structural Biology.

Authors:  Bryce E Ackermann; Galia T Debelouchina
Journal:  Front Mol Biosci       Date:  2021-10-11

6.  Solid-state 17O NMR study of α-d-glucose: exploring new frontiers in isotopic labeling, sensitivity enhancement, and NMR crystallography.

Authors:  Jiahui Shen; Victor Terskikh; Jochem Struppe; Alia Hassan; Martine Monette; Ivan Hung; Zhehong Gan; Andreas Brinkmann; Gang Wu
Journal:  Chem Sci       Date:  2022-01-03       Impact factor: 9.825

Review 7.  Solid State NMR Spectroscopy a Valuable Technique for Structural Insights of Advanced Thin Film Materials: A Review.

Authors:  Mustapha El Hariri El Nokab; Khaled O Sebakhy
Journal:  Nanomaterials (Basel)       Date:  2021-06-04       Impact factor: 5.076

8.  Atomic-resolution chemical characterization of (2x)72-kDa tryptophan synthase via four- and five-dimensional 1H-detected solid-state NMR.

Authors:  Alexander Klein; Petra Rovó; Varun V Sakhrani; Yangyang Wang; Jacob B Holmes; Viktoriia Liu; Patricia Skowronek; Laura Kukuk; Suresh K Vasa; Peter Güntert; Leonard J Mueller; Rasmus Linser
Journal:  Proc Natl Acad Sci U S A       Date:  2022-01-25       Impact factor: 11.205

  8 in total

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