Literature DB >> 26677229

A Unique Tool for Cellular Structural Biology: In-cell NMR.

Enrico Luchinat1, Lucia Banci2.   

Abstract

Conventional structural and chemical biology approaches are applied to macromolecules extrapolated from their native context. When this is done, important structural and functional features of macromolecules, which depend on their native network of interactions within the cell, may be lost. In-cell nuclear magnetic resonance is a branch of biomolecular NMR spectroscopy that allows macromolecules to be analyzed in living cells, at the atomic level. In-cell NMR can be applied to several cellular systems to obtain biologically relevant structural and functional information. Here we summarize the existing approaches and focus on the applications to protein folding, interactions, and post-translational modifications.
© 2016 by The American Society for Biochemistry and Molecular Biology, Inc.

Keywords:  cell compartmentalization; intracellular processing; molecular cell biology; nuclear magnetic resonance (NMR); post-translational modification (PTM); protein folding; structural biology

Mesh:

Year:  2015        PMID: 26677229      PMCID: PMC4759160          DOI: 10.1074/jbc.R115.643247

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  56 in total

1.  Multi-phosphorylation of the intrinsically disordered unique domain of c-Src studied by in-cell and real-time NMR spectroscopy.

Authors:  Irene Amata; Mariano Maffei; Ana Igea; Marina Gay; Marta Vilaseca; Angel R Nebreda; Miquel Pons
Journal:  Chembiochem       Date:  2013-06-06       Impact factor: 3.164

2.  Molecular crowding drives active Pin1 into nonspecific complexes with endogenous proteins prior to substrate recognition.

Authors:  Laura M Luh; Robert Hänsel; Frank Löhr; Donata K Kirchner; Katharina Krauskopf; Susanne Pitzius; Birgit Schäfer; Peter Tufar; Ivan Corbeski; Peter Güntert; Volker Dötsch
Journal:  J Am Chem Soc       Date:  2013-09-06       Impact factor: 15.419

3.  (19) F NMR spectroscopy as a probe of cytoplasmic viscosity and weak protein interactions in living cells.

Authors:  Yansheng Ye; Xiaoli Liu; Zeting Zhang; Qiong Wu; Bin Jiang; Ling Jiang; Xu Zhang; Maili Liu; Gary J Pielak; Conggang Li
Journal:  Chemistry       Date:  2013-08-06       Impact factor: 5.236

4.  Protein crowding tunes protein stability.

Authors:  Andrew C Miklos; Mohona Sarkar; Yaqiang Wang; Gary J Pielak
Journal:  J Am Chem Soc       Date:  2011-04-20       Impact factor: 15.419

5.  A gel-encapsulated bioreactor system for NMR studies of protein-protein interactions in living mammalian cells.

Authors:  Satoshi Kubo; Noritaka Nishida; Yuko Udagawa; Osamu Takarada; Shinji Ogino; Ichio Shimada
Journal:  Angew Chem Int Ed Engl       Date:  2012-11-29       Impact factor: 15.336

6.  Visualization of redox-controlled protein fold in living cells.

Authors:  Lucia Banci; Letizia Barbieri; Enrico Luchinat; Erica Secci
Journal:  Chem Biol       Date:  2013-06-20

Review 7.  Investigation of quadruplex structure under physiological conditions using in-cell NMR.

Authors:  Robert Hänsel; Silvie Foldynová-Trantírková; Volker Dötsch; Lukáš Trantírek
Journal:  Top Curr Chem       Date:  2013

8.  Pruning the ALS-associated protein SOD1 for in-cell NMR.

Authors:  Jens Danielsson; Kohsuke Inomata; Shuhei Murayama; Hidehito Tochio; Lisa Lang; Masahiro Shirakawa; Mikael Oliveberg
Journal:  J Am Chem Soc       Date:  2013-07-08       Impact factor: 15.419

9.  Fate of pup inside the Mycobacterium proteasome studied by in-cell NMR.

Authors:  Andres Y Maldonado; David S Burz; Sergey Reverdatto; Alexander Shekhtman
Journal:  PLoS One       Date:  2013-09-10       Impact factor: 3.240

10.  Atomic-resolution monitoring of protein maturation in live human cells by NMR.

Authors:  Lucia Banci; Letizia Barbieri; Ivano Bertini; Enrico Luchinat; Erica Secci; Yuguang Zhao; A Radu Aricescu
Journal:  Nat Chem Biol       Date:  2013-03-03       Impact factor: 15.040

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  20 in total

Review 1.  Introduction to the Minireview Series on Modern Technologies for In-cell Biochemistry.

Authors:  Svetlana Lutsenko
Journal:  J Biol Chem       Date:  2015-12-16       Impact factor: 5.157

Review 2.  Biogenesis, quality control, and structural dynamics of proteins as explored in living cells via site-directed photocrosslinking.

Authors:  Xinmiao Fu; Zengyi Chang
Journal:  Protein Sci       Date:  2019-05-10       Impact factor: 6.725

Review 3.  To be disordered or not to be disordered: is that still a question for proteins in the cell?

Authors:  Kris Pauwels; Pierre Lebrun; Peter Tompa
Journal:  Cell Mol Life Sci       Date:  2017-06-13       Impact factor: 9.261

Review 4.  Interaction proteomics by using in-cell NMR spectroscopy.

Authors:  Leonard Breindel; David S Burz; Alexander Shekhtman
Journal:  J Proteomics       Date:  2018-02-08       Impact factor: 4.044

Review 5.  Biophysics in drug discovery: impact, challenges and opportunities.

Authors:  Jean-Paul Renaud; Chun-Wa Chung; U Helena Danielson; Ursula Egner; Michael Hennig; Roderick E Hubbard; Herbert Nar
Journal:  Nat Rev Drug Discov       Date:  2016-08-12       Impact factor: 84.694

Review 6.  New NMR tools for protein structure and function: Spin tags for dynamic nuclear polarization solid state NMR.

Authors:  Rivkah Rogawski; Ann E McDermott
Journal:  Arch Biochem Biophys       Date:  2017-06-13       Impact factor: 4.013

Review 7.  NMR of Macromolecular Assemblies and Machines at 1 GHz and Beyond: New Transformative Opportunities for Molecular Structural Biology.

Authors:  Caitlin M Quinn; Mingzhang Wang; Tatyana Polenova
Journal:  Methods Mol Biol       Date:  2018

8.  Robust and transferable quantification of NMR spectral quality using IROC analysis.

Authors:  Matthew A Zambrello; Mark W Maciejewski; Adam D Schuyler; Gerard Weatherby; Jeffrey C Hoch
Journal:  J Magn Reson       Date:  2017-10-16       Impact factor: 2.229

9.  In-Cell NMR of Intrinsically Disordered Proteins in Mammalian Cells.

Authors:  Juan A Gerez; Natalia C Prymaczok; Roland Riek
Journal:  Methods Mol Biol       Date:  2020

10.  A novel approach for studying receptor-ligand interactions on living cells surface by using NUS/T1ρ-NMR methodologies combined with computational techniques: The RGDechi15D-αvβ5 integrin complex.

Authors:  Biancamaria Farina; Corvino Andrea; Annarita Del Gatto; Daniela Comegna; Sonia Di Gaetano; Domenica Capasso; Antonella Paladino; Clementina Acconcia; Maria Teresa Gentile; Michele Saviano; Roberto Fattorusso; Laura Zaccaro; Luigi Russo
Journal:  Comput Struct Biotechnol J       Date:  2021-05-29       Impact factor: 7.271

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