Literature DB >> 10423377

Determination of multiple ***φ***-torsion angles in proteins by selective and extensive (13)C labeling and two-dimensional solid-state NMR.

M Hong1.   

Abstract

We describe an approach to efficiently determine the backbone conformation of solid proteins that utilizes selective and extensive (13)C labeling in conjunction with two-dimensional magic-angle-spinning NMR. The selective (13)C labeling approach aims to reduce line broadening and other multispin complications encountered in solid-state NMR of uniformly labeled proteins while still enhancing the sensitivity of NMR spectra. It is achieved by using specifically labeled glucose or glycerol as the sole carbon source in the protein expression medium. For amino acids synthesized in the linear part of the biosynthetic pathways, [1-(13)C]glucose preferentially labels the ends of the side chains, while [2-(13)C]glycerol labels the C(alpha) of these residues. Amino acids produced from the citric-acid cycle are labeled in a more complex manner. Information on the secondary structure of such a labeled protein was obtained by measuring multiple backbone torsion angles phi; simultaneously, using an isotropic-anisotropic 2D correlation technique, the HNCH experiment. Initial experiments for resonance assignment of a selectively (13)C labeled protein were performed using (15)N-(13)C 2D correlation spectroscopy. From the time dependence of the (15)N-(13)C dipolar coherence transfer, both intraresidue and interresidue connectivities can be observed, thus yielding partial sequential assignment. We demonstrate the selective (13)C labeling and these 2D NMR experiments on a 8.5-kDa model protein, ubiquitin. This isotope-edited NMR approach is expected to facilitate the structure determination of proteins in the solid state. Copyright 1999 Academic Press.

Entities:  

Mesh:

Substances:

Year:  1999        PMID: 10423377     DOI: 10.1006/jmre.1999.1805

Source DB:  PubMed          Journal:  J Magn Reson        ISSN: 1090-7807            Impact factor:   2.229


  49 in total

1.  Measurement of conformational constraints in an elastin-mimetic protein by residue-pair selected solid-state NMR.

Authors:  Mei Hong; R Andrew McMillan; Vincent P Conticello
Journal:  J Biomol NMR       Date:  2002-02       Impact factor: 2.835

Review 2.  Recent developments in solid-state magic-angle spinning, nuclear magnetic resonance of fully and significantly isotopically labelled peptides and proteins.

Authors:  Suzana K Straus
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2004-06-29       Impact factor: 6.237

3.  Selectively dispersed isotope labeling for protein structure determination by magic angle spinning NMR.

Authors:  Matthew T Eddy; Marina Belenky; Astrid C Sivertsen; Robert G Griffin; Judith Herzfeld
Journal:  J Biomol NMR       Date:  2013-08-30       Impact factor: 2.835

4.  Atomic Resolution Structure of Monomorphic Aβ42 Amyloid Fibrils.

Authors:  Michael T Colvin; Robert Silvers; Qing Zhe Ni; Thach V Can; Ivan Sergeyev; Melanie Rosay; Kevin J Donovan; Brian Michael; Joseph Wall; Sara Linse; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2016-07-14       Impact factor: 15.419

5.  Long-range correlations between aliphatic 13C nuclei in protein MAS NMR spectroscopy.

Authors:  Marvin J Bayro; Thorsten Maly; Neil R Birkett; Christopher M Dobson; Robert G Griffin
Journal:  Angew Chem Int Ed Engl       Date:  2009       Impact factor: 15.336

6.  Atomic resolution protein structure determination by three-dimensional transferred echo double resonance solid-state nuclear magnetic resonance spectroscopy.

Authors:  Andrew J Nieuwkoop; Benjamin J Wylie; W Trent Franks; Gautam J Shah; Chad M Rienstra
Journal:  J Chem Phys       Date:  2009-09-07       Impact factor: 3.488

7.  Peptide and Protein Dynamics and Low-Temperature/DNP Magic Angle Spinning NMR.

Authors:  Qing Zhe Ni; Evgeny Markhasin; Thach V Can; Björn Corzilius; Kong Ooi Tan; Alexander B Barnes; Eugenio Daviso; Yongchao Su; Judith Herzfeld; Robert G Griffin
Journal:  J Phys Chem B       Date:  2017-05-10       Impact factor: 2.991

8.  Assigning large proteins in the solid state: a MAS NMR resonance assignment strategy using selectively and extensively 13C-labelled proteins.

Authors:  Victoria A Higman; Jeremy Flinders; Matthias Hiller; Stefan Jehle; Stefan Markovic; Sebastian Fiedler; Barth-Jan van Rossum; Hartmut Oschkinat
Journal:  J Biomol NMR       Date:  2009-07-17       Impact factor: 2.835

9.  Tailoring 13C labeling for triple-resonance solid-state NMR experiments on aligned samples of proteins.

Authors:  Neeraj Sinha; Fabian V Filipp; Lena Jairam; Sang Ho Park; Joel Bradley; Stanley J Opella
Journal:  Magn Reson Chem       Date:  2007-12       Impact factor: 2.447

10.  Intermolecular alignment in β2-microglobulin amyloid fibrils.

Authors:  Galia T Debelouchina; Geoffrey W Platt; Marvin J Bayro; Sheena E Radford; Robert G Griffin
Journal:  J Am Chem Soc       Date:  2010-11-15       Impact factor: 15.419

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.