Literature DB >> 28726822

Ribosomes are optimized for autocatalytic production.

Shlomi Reuveni1, Måns Ehrenberg2, Johan Paulsson1.   

Abstract

Many fine-scale features of ribosomes have been explained in terms of function, revealing a molecular machine that is optimized for error-correction, speed and control. Here we demonstrate mathematically that many less well understood, larger-scale features of ribosomes-such as why a few ribosomal RNA molecules dominate the mass and why the ribosomal protein content is divided into 55-80 small, similarly sized segments-speed up their autocatalytic production.

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Year:  2017        PMID: 28726822      PMCID: PMC7239375          DOI: 10.1038/nature22998

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  33 in total

1.  Molecular crowding limits translation and cell growth.

Authors:  Stefan Klumpp; Matthew Scott; Steen Pedersen; Terence Hwa
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-30       Impact factor: 11.205

Review 2.  Diverse mechanisms for regulating ribosomal protein synthesis in Escherichia coli.

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Journal:  Prog Nucleic Acid Res Mol Biol       Date:  1994

Review 3.  Assembly of bacterial ribosomes.

Authors:  Zahra Shajani; Michael T Sykes; James R Williamson
Journal:  Annu Rev Biochem       Date:  2011       Impact factor: 23.643

4.  The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.

Authors:  Alexander G Myasnikov; Zhanna A Afonina; Jean-François Ménétret; Vladimir A Shirokov; Alexander S Spirin; Bruno P Klaholz
Journal:  Nat Commun       Date:  2014-11-07       Impact factor: 14.919

5.  Ribosomal protein S1 unwinds double-stranded RNA in multiple steps.

Authors:  Xiaohui Qu; Laura Lancaster; Harry F Noller; Carlos Bustamante; Ignacio Tinoco
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

6.  Costs of accuracy determined by a maximal growth rate constraint.

Authors:  M Ehrenberg; C G Kurland
Journal:  Q Rev Biophys       Date:  1984-02       Impact factor: 5.318

7.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

8.  The genome sequence of Rickettsia prowazekii and the origin of mitochondria.

Authors:  S G Andersson; A Zomorodipour; J O Andersson; T Sicheritz-Pontén; U C Alsmark; R M Podowski; A K Näslund; A S Eriksson; H H Winkler; C G Kurland
Journal:  Nature       Date:  1998-11-12       Impact factor: 49.962

Review 9.  Ribosome biogenesis in the yeast Saccharomyces cerevisiae.

Authors:  John L Woolford; Susan J Baserga
Journal:  Genetics       Date:  2013-11       Impact factor: 4.562

Review 10.  Heterogeneity of the translational machinery: Variations on a common theme.

Authors:  Martina Sauert; Hannes Temmel; Isabella Moll
Journal:  Biochimie       Date:  2014-12-24       Impact factor: 4.079

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  23 in total

1.  Small and Large Ribosomal Subunit Deficiencies Lead to Distinct Gene Expression Signatures that Reflect Cellular Growth Rate.

Authors:  Ze Cheng; Christopher Frederick Mugler; Abdurrahman Keskin; Stefanie Hodapp; Leon Yen-Lee Chan; Karsten Weis; Philipp Mertins; Aviv Regev; Marko Jovanovic; Gloria Ann Brar
Journal:  Mol Cell       Date:  2018-11-29       Impact factor: 17.970

Review 2.  Fundamental principles in bacterial physiology-history, recent progress, and the future with focus on cell size control: a review.

Authors:  Suckjoon Jun; Fangwei Si; Rami Pugatch; Matthew Scott
Journal:  Rep Prog Phys       Date:  2018-01-09

Review 3.  Chloroplast Translation: Structural and Functional Organization, Operational Control, and Regulation.

Authors:  Reimo Zoschke; Ralph Bock
Journal:  Plant Cell       Date:  2018-04-02       Impact factor: 11.277

Review 4.  Ribosome Abundance Control Via the Ubiquitin-Proteasome System and Autophagy.

Authors:  Heeseon An; J Wade Harper
Journal:  J Mol Biol       Date:  2019-06-11       Impact factor: 5.469

5.  Accuracy of genetic code translation and its orthogonal corruption by aminoglycosides and Mg2+ ions.

Authors:  Jingji Zhang; Michael Y Pavlov; Måns Ehrenberg
Journal:  Nucleic Acids Res       Date:  2018-02-16       Impact factor: 16.971

Review 6.  Heterogeneity and specialized functions of translation machinery: from genes to organisms.

Authors:  Naomi R Genuth; Maria Barna
Journal:  Nat Rev Genet       Date:  2018-07       Impact factor: 53.242

Review 7.  Prebiotic Pathway from Ribose to RNA Formation.

Authors:  Gaspar Banfalvi
Journal:  Int J Mol Sci       Date:  2021-04-08       Impact factor: 6.208

8.  Fundamental limits on the rate of bacterial growth and their influence on proteomic composition.

Authors:  Nathan M Belliveau; Griffin Chure; Christina L Hueschen; Hernan G Garcia; Jane Kondev; Daniel S Fisher; Julie A Theriot; Rob Phillips
Journal:  Cell Syst       Date:  2021-07-01       Impact factor: 11.091

9.  Identification of Key Candidate Proteins and Pathways Associated with Temozolomide Resistance in Glioblastoma Based on Subcellular Proteomics and Bioinformatical Analysis.

Authors:  Guo-Zhong Yi; Wei Xiang; Wen-Yan Feng; Zi-Yang Chen; Yao-Min Li; Sheng-Ze Deng; Man-Lan Guo; Liang Zhao; Xue-Gang Sun; Min-Yi He; Song-Tao Qi; Ya-Wei Liu
Journal:  Biomed Res Int       Date:  2018-03-01       Impact factor: 3.411

10.  Principles of cellular resource allocation revealed by condition-dependent proteome profiling.

Authors:  Eyal Metzl-Raz; Moshe Kafri; Gilad Yaakov; Ilya Soifer; Yonat Gurvich; Naama Barkai
Journal:  Elife       Date:  2017-08-31       Impact factor: 8.140

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