Literature DB >> 25376914

The molecular structure of the left-handed supra-molecular helix of eukaryotic polyribosomes.

Alexander G Myasnikov1, Zhanna A Afonina2, Jean-François Ménétret1, Vladimir A Shirokov2, Alexander S Spirin2, Bruno P Klaholz1.   

Abstract

During protein synthesis, several ribosomes bind to a single messenger RNA (mRNA) forming large macromolecular assemblies called polyribosomes. Here we report the detailed molecular structure of a 100 MDa eukaryotic poly-ribosome complex derived from cryo electron tomography, sub-tomogram averaging and pseudo-atomic modelling by crystal structure fitting. The structure allowed the visualization of the three functional parts of the polysome assembly, the central core region that forms a rather compact left-handed supra-molecular helix, and the more open regions that harbour the initiation and termination sites at either ends. The helical region forms a continuous mRNA channel where the mRNA strand bridges neighbouring exit and entry sites of the ribosomes and prevents mRNA looping between ribosomes. This structure provides unprecedented insights into protein- and RNA-mediated inter-ribosome contacts that involve conserved sites through 40S subunits and long protruding RNA expansion segments, suggesting a role in stabilizing the overall polyribosomal assembly.

Mesh:

Substances:

Year:  2014        PMID: 25376914     DOI: 10.1038/ncomms6294

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  20 in total

1.  TLR7 dosage polymorphism shapes interferogenesis and HIV-1 acute viremia in women.

Authors:  Pascal Azar; José Enrique Mejía; Claire Cenac; Arnoo Shaiykova; Ali Youness; Sophie Laffont; Asma Essat; Jacques Izopet; Caroline Passaes; Michaela Müller-Trutwin; Pierre Delobel; Laurence Meyer; Jean-Charles Guéry
Journal:  JCI Insight       Date:  2020-06-18

2.  Peering at Brain Polysomes with Atomic Force Microscopy.

Authors:  Lorenzo Lunelli; Paola Bernabò; Alice Bolner; Valentina Vaghi; Marta Marchioretto; Gabriella Viero
Journal:  J Vis Exp       Date:  2016-03-16       Impact factor: 1.355

Review 3.  Revisiting the Closed-Loop Model and the Nature of mRNA 5'-3' Communication.

Authors:  Quentin Vicens; Jeffrey S Kieft; Olivia S Rissland
Journal:  Mol Cell       Date:  2018-12-06       Impact factor: 17.970

4.  A transformation clustering algorithm and its application in polyribosomes structural profiling.

Authors:  Wenhong Jiang; Jonathan Wagner; Wenjing Du; Juergen Plitzko; Wolfgang Baumeister; Florian Beck; Qiang Guo
Journal:  Nucleic Acids Res       Date:  2022-09-09       Impact factor: 19.160

5.  Ribosomes are optimized for autocatalytic production.

Authors:  Shlomi Reuveni; Måns Ehrenberg; Johan Paulsson
Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

6.  Functional Dynamics within the Human Ribosome Regulate the Rate of Active Protein Synthesis.

Authors:  Angelica Ferguson; Leyi Wang; Roger B Altman; Daniel S Terry; Manuel F Juette; Benjamin J Burnett; Jose L Alejo; Randall A Dass; Matthew M Parks; C Theresa Vincent; Scott C Blanchard
Journal:  Mol Cell       Date:  2015-10-22       Impact factor: 17.970

7.  Structural snapshots of actively translating human ribosomes.

Authors:  Elmar Behrmann; Justus Loerke; Tatyana V Budkevich; Kaori Yamamoto; Andrea Schmidt; Pawel A Penczek; Matthijn R Vos; Jörg Bürger; Thorsten Mielke; Patrick Scheerer; Christian M T Spahn
Journal:  Cell       Date:  2015-05-07       Impact factor: 41.582

8.  Three distinct ribosome assemblies modulated by translation are the building blocks of polysomes.

Authors:  Gabriella Viero; Lorenzo Lunelli; Andrea Passerini; Paolo Bianchini; Robert J Gilbert; Paola Bernabò; Toma Tebaldi; Alberto Diaspro; Cecilia Pederzolli; Alessandro Quattrone
Journal:  J Cell Biol       Date:  2015-02-23       Impact factor: 10.539

9.  Conformation transitions of eukaryotic polyribosomes during multi-round translation.

Authors:  Zhanna A Afonina; Alexander G Myasnikov; Vladimir A Shirokov; Bruno P Klaholz; Alexander S Spirin
Journal:  Nucleic Acids Res       Date:  2014-12-17       Impact factor: 16.971

10.  RiboAbacus: a model trained on polyribosome images predicts ribosome density and translational efficiency from mammalian transcriptomes.

Authors:  Fabio Lauria; Toma Tebaldi; Lorenzo Lunelli; Paolo Struffi; Pamela Gatto; Andrea Pugliese; Maurizio Brigotti; Lorenzo Montanaro; Yari Ciribilli; Alberto Inga; Alessandro Quattrone; Guido Sanguinetti; Gabriella Viero
Journal:  Nucleic Acids Res       Date:  2015-08-03       Impact factor: 16.971

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.