Literature DB >> 24082144

Molecular crowding limits translation and cell growth.

Stefan Klumpp1, Matthew Scott, Steen Pedersen, Terence Hwa.   

Abstract

Bacterial growth is crucially dependent on protein synthesis and thus on the cellular abundance of ribosomes and related proteins. Here, we show that the slow diffusion of the bulky tRNA complexes in the crowded cytoplasm imposes a physical limit on the speed of translation, which ultimately limits the rate of cell growth. To study the required allocation of ancillary translational proteins to alleviate the effect of molecular crowding, we develop a model for cell growth based on a coarse-grained partitioning of the proteome. We find that coregulation of ribosome- and tRNA-affiliated proteins is consistent with measured growth-rate dependencies and results in near-optimal allocation over a broad range of growth rates. The analysis further resolves a long-standing controversy in bacterial growth physiology concerning the growth-rate dependence of translation speed and serves as a caution against premature identification of phenomenological parameters with mechanistic processes.

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Year:  2013        PMID: 24082144      PMCID: PMC3801028          DOI: 10.1073/pnas.1310377110

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  36 in total

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3.  Mechanistic links between cellular trade-offs, gene expression, and growth.

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Review 4.  Understanding biochemical processes in the presence of sub-diffusive behavior of biomolecules in solution and living cells.

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Review 5.  Microorganisms maintain crowding homeostasis.

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9.  In vivo single-RNA tracking shows that most tRNA diffuses freely in live bacteria.

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10.  Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth.

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