Literature DB >> 25542647

Heterogeneity of the translational machinery: Variations on a common theme.

Martina Sauert1, Hannes Temmel1, Isabella Moll1.   

Abstract

In all organisms the universal process of protein synthesis is performed by the ribosome, a complex multi-component assembly composed of RNA and protein elements. Although ribosome heterogeneity was observed already more than 40 years ago, the ribosome is still traditionally viewed as an unchangeable entity that has to be equipped with all ribosomal components and translation factors in order to precisely accomplish all steps in protein synthesis. In the recent years this concept was challenged by several studies highlighting a broad variation in the composition of the translational machinery in response to environmental signals, which leads to its adaptation and functional specialization. Here, we summarize recent reports on the variability of the protein synthesis apparatus in diverse organisms and discuss the multiple mechanisms and possibilities that can lead to functional ribosome heterogeneity. Collectively, these results indicate that all cells are equipped with a remarkable toolbox to fine tune gene expression at the level of translation and emphasize the physiological importance of ribosome heterogeneity for the immediate implementation of environmental information.
Copyright © 2015 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Gene expression regulation; Protein synthesis; Ribosome heterogeneity; Stress response; Translation regulation

Mesh:

Substances:

Year:  2014        PMID: 25542647      PMCID: PMC4894553          DOI: 10.1016/j.biochi.2014.12.011

Source DB:  PubMed          Journal:  Biochimie        ISSN: 0300-9084            Impact factor:   4.079


  129 in total

1.  RPL39L is an example of a recently evolved ribosomal protein paralog that shows highly specific tissue expression patterns and is upregulated in ESCs and HCC tumors.

Authors:  Queenie Wing-Lei Wong; Jia Li; Sheng Rong Ng; Seng Gee Lim; Henry Yang; Leah A Vardy
Journal:  RNA Biol       Date:  2013-12-20       Impact factor: 4.652

Review 2.  Ribosomal tRNA binding sites: three-site models of translation.

Authors:  N Burkhardt; R Jünemann; C M Spahn; K H Nierhaus
Journal:  Crit Rev Biochem Mol Biol       Date:  1998       Impact factor: 8.250

3.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

4.  Hydroxylation of the eukaryotic ribosomal decoding center affects translational accuracy.

Authors:  Christoph Loenarz; Rok Sekirnik; Armin Thalhammer; Wei Ge; Ekaterina Spivakovsky; Mukram M Mackeen; Michael A McDonough; Matthew E Cockman; Benedikt M Kessler; Peter J Ratcliffe; Alexander Wolf; Christopher J Schofield
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-18       Impact factor: 11.205

5.  The human RPS4 paralogue on Yq11.223 encodes a structurally conserved ribosomal protein and is preferentially expressed during spermatogenesis.

Authors:  Alexandra M Lopes; Ricardo N Miguel; Carole A Sargent; Peter J Ellis; António Amorim; Nabeel A Affara
Journal:  BMC Mol Biol       Date:  2010-05-07       Impact factor: 2.946

6.  The diversity of lysine-acetylated proteins in Escherichia coli.

Authors:  Byung Jo Yu; Jung Ae Kim; Jeong Hee Moon; Seong Eon Ryu; Jae-Gu Pan
Journal:  J Microbiol Biotechnol       Date:  2008-09       Impact factor: 2.351

7.  Poly(A)-binding protein-interacting protein 1 binds to eukaryotic translation initiation factor 3 to stimulate translation.

Authors:  Yvan Martineau; Mélanie C Derry; Xiaoshan Wang; Akiko Yanagiya; Juan José Berlanga; Ann-Bin Shyu; Hiroaki Imataka; Kalle Gehring; Nahum Sonenberg
Journal:  Mol Cell Biol       Date:  2008-08-25       Impact factor: 4.272

8.  S1 ribosomal protein and the interplay between translation and mRNA decay.

Authors:  Francesco Delvillani; Giulia Papiani; Gianni Dehò; Federica Briani
Journal:  Nucleic Acids Res       Date:  2011-06-17       Impact factor: 16.971

9.  P1 and P2 protein heterodimer binding to the P0 protein of Saccharomyces cerevisiae is relatively non-specific and a source of ribosomal heterogeneity.

Authors:  David Cárdenas; Jesús Revuelta-Cervantes; Antonio Jiménez-Díaz; Hendricka Camargo; Miguel Remacha; Juan P G Ballesta
Journal:  Nucleic Acids Res       Date:  2012-01-24       Impact factor: 16.971

10.  Architecture of human translation initiation factor 3.

Authors:  Jordi Querol-Audi; Chaomin Sun; Jacob M Vogan; M Duane Smith; Yu Gu; Jamie H D Cate; Eva Nogales
Journal:  Structure       Date:  2013-04-25       Impact factor: 5.006

View more
  40 in total

1.  Ribosome biogenesis may augment resistance training-induced myofiber hypertrophy and is required for myotube growth in vitro.

Authors:  Michael J Stec; Neil A Kelly; Gina M Many; Samuel T Windham; S Craig Tuggle; Marcas M Bamman
Journal:  Am J Physiol Endocrinol Metab       Date:  2016-02-09       Impact factor: 4.310

2.  Expression of Muscle-Specific Ribosomal Protein L3-Like Impairs Myotube Growth.

Authors:  Thomas Chaillou; Xiping Zhang; John J McCarthy
Journal:  J Cell Physiol       Date:  2016-01-14       Impact factor: 6.384

3.  Is the cellular initiation of translation an exclusive property of the initiator tRNAs?

Authors:  Sunil Shetty; Souvik Bhattacharyya; Umesh Varshney
Journal:  RNA Biol       Date:  2015       Impact factor: 4.652

4.  Dynamic translation regulation in Caulobacter cell cycle control.

Authors:  Jared M Schrader; Gene-Wei Li; W Seth Childers; Adam M Perez; Jonathan S Weissman; Lucy Shapiro; Harley H McAdams
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-17       Impact factor: 11.205

Review 5.  Translation regulation by ribosomes: Increased complexity and expanded scope.

Authors:  Vincent P Mauro; Daiki Matsuda
Journal:  RNA Biol       Date:  2015-10-29       Impact factor: 4.652

Review 6.  Protein folding and tRNA biology.

Authors:  Mónica Marín; Tamara Fernández-Calero; Ricardo Ehrlich
Journal:  Biophys Rev       Date:  2017-09-24

Review 7.  Chloroplast Translation: Structural and Functional Organization, Operational Control, and Regulation.

Authors:  Reimo Zoschke; Ralph Bock
Journal:  Plant Cell       Date:  2018-04-02       Impact factor: 11.277

8.  Ribosomes are optimized for autocatalytic production.

Authors:  Shlomi Reuveni; Måns Ehrenberg; Johan Paulsson
Journal:  Nature       Date:  2017-07-19       Impact factor: 49.962

9.  Ras Suppresses TXNIP Expression by Restricting Ribosome Translocation.

Authors:  Zhizhou Ye; Donald E Ayer
Journal:  Mol Cell Biol       Date:  2018-09-28       Impact factor: 4.272

10.  Proteoform Suite: Software for Constructing, Quantifying, and Visualizing Proteoform Families.

Authors:  Anthony J Cesnik; Michael R Shortreed; Leah V Schaffer; Rachel A Knoener; Brian L Frey; Mark Scalf; Stefan K Solntsev; Yunxiang Dai; Audrey P Gasch; Lloyd M Smith
Journal:  J Proteome Res       Date:  2017-12-15       Impact factor: 4.466

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.