Literature DB >> 28648726

Taking the measure of MicroED.

Jose A Rodriguez1, David S Eisenberg2, Tamir Gonen3.   

Abstract

It is now possible to routinely determine atomic resolution structures by electron cryo-microscopy (cryoEM), facilitated in part by the method known as micro electron-diffraction (MicroED). Since its initial demonstration in 2013, MicroED has helped determine a variety of protein structures ranging in molecular weight from a few hundred Daltons to several hundred thousand Daltons. Some of these structures were novel while others were previously known. The resolutions of structures obtained thus far by MicroED range from 3.2Å to 1.0Å, with most better than 2.5Å. Crystals of various sizes and shapes, with different space group symmetries, and with a range of solvent content have all been studied by MicroED. The wide range of crystals explored to date presents the community with a landscape of opportunity for structure determination from nano crystals. Here we summarize the lessons we have learned during the first few years of MicroED, and from our attempts at the first ab initio structure determined by the method. We re-evaluate theoretical considerations in choosing the appropriate crystals for MicroED and for extracting the most meaning out of measured data. With more laboratories worldwide adopting the technique, we speculate what the first decade might hold for MicroED.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28648726      PMCID: PMC5683914          DOI: 10.1016/j.sbi.2017.06.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  33 in total

Review 1.  Visualizing cells at the nanoscale.

Authors:  Andrew Leis; Beate Rockel; Lars Andrees; Wolfgang Baumeister
Journal:  Trends Biochem Sci       Date:  2008-12-26       Impact factor: 13.807

2.  The Direct Methods of X-ray Crystallography.

Authors:  H Hauptman
Journal:  Science       Date:  1986-07-11       Impact factor: 47.728

3.  Electron crystallography of ultrathin 3D protein crystals: atomic model with charges.

Authors:  Koji Yonekura; Kazuyuki Kato; Mitsuo Ogasawara; Masahiro Tomita; Chikashi Toyoshima
Journal:  Proc Natl Acad Sci U S A       Date:  2015-02-17       Impact factor: 11.205

4.  High-voltage electron diffraction from bacteriorhodopsin (purple membrane) is measurably dynamical.

Authors:  R M Glaeser; T A Ceska
Journal:  Acta Crystallogr A       Date:  1989-09-01       Impact factor: 2.290

5.  Solving protein nanocrystals by cryo-EM diffraction: multiple scattering artifacts.

Authors:  Ganesh Subramanian; Shibom Basu; Haiguang Liu; Jian-Min Zuo; John C H Spence
Journal:  Ultramicroscopy       Date:  2014-10-06       Impact factor: 2.689

Review 6.  High-Resolution Macromolecular Structure Determination by MicroED, a cryo-EM Method.

Authors:  J A Rodriguez; T Gonen
Journal:  Methods Enzymol       Date:  2016-06-16       Impact factor: 1.600

7.  MicroED data collection and processing.

Authors:  Johan Hattne; Francis E Reyes; Brent L Nannenga; Dan Shi; M Jason de la Cruz; Andrew G W Leslie; Tamir Gonen
Journal:  Acta Crystallogr A Found Adv       Date:  2015-07-01       Impact factor: 2.290

8.  Progress in low-resolution ab initio phasing with CrowdPhase.

Authors:  Julien Jorda; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-03-01       Impact factor: 7.652

9.  Atomic structures of fibrillar segments of hIAPP suggest tightly mated β-sheets are important for cytotoxicity.

Authors:  Pascal Krotee; Jose A Rodriguez; Michael R Sawaya; Duilio Cascio; Francis E Reyes; Dan Shi; Johan Hattne; Brent L Nannenga; Marie E Oskarsson; Stephan Philipp; Sarah Griner; Lin Jiang; Charles G Glabe; Gunilla T Westermark; Tamir Gonen; David S Eisenberg
Journal:  Elife       Date:  2017-01-03       Impact factor: 8.140

10.  The collection of high-resolution electron diffraction data.

Authors:  Tamir Gonen
Journal:  Methods Mol Biol       Date:  2013
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  12 in total

1.  MicroED structures of HIV-1 Gag CTD-SP1 reveal binding interactions with the maturation inhibitor bevirimat.

Authors:  Michael D Purdy; Dan Shi; Jakub Chrustowicz; Johan Hattne; Tamir Gonen; Mark Yeager
Journal:  Proc Natl Acad Sci U S A       Date:  2018-12-10       Impact factor: 11.205

Review 2.  The cryo-EM method microcrystal electron diffraction (MicroED).

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Nat Methods       Date:  2019-04-29       Impact factor: 28.547

Review 3.  The complementarity of serial femtosecond crystallography and MicroED for structure determination from microcrystals.

Authors:  Nadia A Zatsepin; Chufeng Li; Paige Colasurd; Brent L Nannenga
Journal:  Curr Opin Struct Biol       Date:  2019-07-22       Impact factor: 6.809

Review 4.  Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Authors:  Phuong H Nguyen; Ayyalusamy Ramamoorthy; Bikash R Sahoo; Jie Zheng; Peter Faller; John E Straub; Laura Dominguez; Joan-Emma Shea; Nikolay V Dokholyan; Alfonso De Simone; Buyong Ma; Ruth Nussinov; Saeed Najafi; Son Tung Ngo; Antoine Loquet; Mara Chiricotto; Pritam Ganguly; James McCarty; Mai Suan Li; Carol Hall; Yiming Wang; Yifat Miller; Simone Melchionna; Birgit Habenstein; Stepan Timr; Jiaxing Chen; Brianna Hnath; Birgit Strodel; Rakez Kayed; Sylvain Lesné; Guanghong Wei; Fabio Sterpone; Andrew J Doig; Philippe Derreumaux
Journal:  Chem Rev       Date:  2021-02-05       Impact factor: 60.622

Review 5.  Where is crystallography going?

Authors:  Jonathan M Grimes; David R Hall; Alun W Ashton; Gwyndaf Evans; Robin L Owen; Armin Wagner; Katherine E McAuley; Frank von Delft; Allen M Orville; Thomas Sorensen; Martin A Walsh; Helen M Ginn; David I Stuart
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-02-01       Impact factor: 7.652

6.  Nanoscale mosaicity revealed in peptide microcrystals by scanning electron nanodiffraction.

Authors:  Marcus Gallagher-Jones; Colin Ophus; Karen C Bustillo; David R Boyer; Ouliana Panova; Calina Glynn; Chih-Te Zee; Jim Ciston; Kevin Canton Mancia; Andrew M Minor; Jose A Rodriguez
Journal:  Commun Biol       Date:  2019-01-18

7.  MicroED: a versatile cryoEM method for structure determination.

Authors:  Brent L Nannenga; Tamir Gonen
Journal:  Emerg Top Life Sci       Date:  2018-02-06

8.  Taming Radical Pairs in the Crystalline Solid State: Discovery and Total Synthesis of Psychotriadine.

Authors:  Jordan J Dotson; Ieva Liepuoniute; J Logan Bachman; Vince M Hipwell; Saeed I Khan; K N Houk; Neil K Garg; Miguel A Garcia-Garibay
Journal:  J Am Chem Soc       Date:  2021-03-08       Impact factor: 15.419

9.  Ab Initio Determination of Peptide Structures by MicroED.

Authors:  Chih-Te Zee; Ambarneil Saha; Michael R Sawaya; Jose A Rodriguez
Journal:  Methods Mol Biol       Date:  2021

10.  Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp.

Authors:  Marcus Gallagher-Jones; Calina Glynn; David R Boyer; Michael W Martynowycz; Evelyn Hernandez; Jennifer Miao; Chih-Te Zee; Irina V Novikova; Lukasz Goldschmidt; Heather T McFarlane; Gustavo F Helguera; James E Evans; Michael R Sawaya; Duilio Cascio; David S Eisenberg; Tamir Gonen; Jose A Rodriguez
Journal:  Nat Struct Mol Biol       Date:  2018-01-15       Impact factor: 15.369

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