Literature DB >> 31040436

The cryo-EM method microcrystal electron diffraction (MicroED).

Brent L Nannenga1,2, Tamir Gonen3,4.   

Abstract

In 2013 we established a cryo-electron microscopy (cryo-EM) technique called microcrystal electron diffraction (MicroED). Since that time, data collection and analysis schemes have been fine-tuned, and structures for more than 40 different proteins, oligopeptides and organic molecules have been determined. Here we review the MicroED technique and place it in context with other structure-determination methods. We showcase example structures solved by MicroED and provide practical advice to prospective users.

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Year:  2019        PMID: 31040436      PMCID: PMC6568260          DOI: 10.1038/s41592-019-0395-x

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  92 in total

Review 1.  Review: electron crystallography: present excitement, a nod to the past, anticipating the future.

Authors:  R M Glaeser
Journal:  J Struct Biol       Date:  1999-12-01       Impact factor: 2.867

2.  "Ab initio" structure solution from electron diffraction data obtained by a combination of automated diffraction tomography and precession technique.

Authors:  E Mugnaioli; T Gorelik; U Kolb
Journal:  Ultramicroscopy       Date:  2009-02-06       Impact factor: 2.689

3.  Analysis of Global and Site-Specific Radiation Damage in Cryo-EM.

Authors:  Johan Hattne; Dan Shi; Calina Glynn; Chih-Te Zee; Marcus Gallagher-Jones; Michael W Martynowycz; Jose A Rodriguez; Tamir Gonen
Journal:  Structure       Date:  2018-04-26       Impact factor: 5.006

Review 4.  Cryo-Electron Tomography: Can it Reveal the Molecular Sociology of Cells in Atomic Detail?

Authors:  Martin Beck; Wolfgang Baumeister
Journal:  Trends Cell Biol       Date:  2016-09-23       Impact factor: 20.808

5.  Analysis of transient structures by cryo-microscopy combined with rapid mixing of spray droplets.

Authors:  J Berriman; N Unwin
Journal:  Ultramicroscopy       Date:  1994-12       Impact factor: 2.689

6.  MicroED data collection with SerialEM.

Authors:  M Jason de la Cruz; Michael W Martynowycz; Johan Hattne; Tamir Gonen
Journal:  Ultramicroscopy       Date:  2019-03-19       Impact factor: 2.689

7.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

8.  The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination.

Authors:  Christopher G Jones; Michael W Martynowycz; Johan Hattne; Tyler J Fulton; Brian M Stoltz; Jose A Rodriguez; Hosea M Nelson; Tamir Gonen
Journal:  ACS Cent Sci       Date:  2018-11-02       Impact factor: 14.553

9.  The collection of high-resolution electron diffraction data.

Authors:  Tamir Gonen
Journal:  Methods Mol Biol       Date:  2013

10.  Sub-ångström cryo-EM structure of a prion protofibril reveals a polar clasp.

Authors:  Marcus Gallagher-Jones; Calina Glynn; David R Boyer; Michael W Martynowycz; Evelyn Hernandez; Jennifer Miao; Chih-Te Zee; Irina V Novikova; Lukasz Goldschmidt; Heather T McFarlane; Gustavo F Helguera; James E Evans; Michael R Sawaya; Duilio Cascio; David S Eisenberg; Tamir Gonen; Jose A Rodriguez
Journal:  Nat Struct Mol Biol       Date:  2018-01-15       Impact factor: 15.369

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  38 in total

1.  MicroED Sample Preparation and Data Collection For Protein Crystals.

Authors:  Guanhong Bu; Brent L Nannenga
Journal:  Methods Mol Biol       Date:  2021

2.  Resolving the interlayer distance of cationic pyrene clusters embedded in superfluid helium droplets using electron diffraction.

Authors:  Lei Lei; Jie Zhang; Marisol Trejo; Stephen D Bradford; Wei Kong
Journal:  J Chem Phys       Date:  2022-02-07       Impact factor: 3.488

3.  An Introduction to the Benchmarking and Publications for Non-Targeted Analysis Working Group.

Authors:  Benjamin J Place; Elin M Ulrich; Jonathan K Challis; Alex Chao; Bowen Du; Kristin Favela; Yong-Lai Feng; Christine M Fisher; Piero Gardinali; Alan Hood; Ann M Knolhoff; Andrew D McEachran; Sara L Nason; Seth R Newton; Brian Ng; Jamie Nuñez; Katherine T Peter; Allison L Phillips; Natalia Quinete; Ryan Renslow; Jon R Sobus; Eric M Sussman; Benedikt Warth; Samanthi Wickramasekara; Antony J Williams
Journal:  Anal Chem       Date:  2021-11-29       Impact factor: 6.986

4.  Structure Determination from Lipidic Cubic Phase Embedded Microcrystals by MicroED.

Authors:  Lan Zhu; Guanhong Bu; Liang Jing; Dan Shi; Ming-Yue Lee; Tamir Gonen; Wei Liu; Brent L Nannenga
Journal:  Structure       Date:  2020-07-30       Impact factor: 5.006

Review 5.  MicroED in natural product and small molecule research.

Authors:  Emma Danelius; Steve Halaby; Wilfred A van der Donk; Tamir Gonen
Journal:  Nat Prod Rep       Date:  2020-09-17       Impact factor: 13.423

6.  MicroED and cannabinoid research.

Authors:  Crist N Filer
Journal:  J Cannabis Res       Date:  2021-05-11

Review 7.  Natural Products as a Foundation for Drug Discovery.

Authors:  John A Beutler
Journal:  Curr Protoc Pharmacol       Date:  2019-09

Review 8.  Open-access data: A cornerstone for artificial intelligence approaches to protein structure prediction.

Authors:  Stephen K Burley; Helen M Berman
Journal:  Structure       Date:  2021-05-12       Impact factor: 5.871

9.  Selecting a stable solid form of remdesivir using microcrystal electron diffraction and crystal structure prediction.

Authors:  Sivakumar Sekharan; Xuetao Liu; Zhuocen Yang; Xiang Liu; Li Deng; Shigang Ruan; Yuriy Abramov; GuangXu Sun; Sizhu Li; Tian Zhou; Baime Shi; Qun Zeng; Qiao Zeng; Chao Chang; Yingdi Jin; Xuekun Shi
Journal:  RSC Adv       Date:  2021-05-12       Impact factor: 4.036

10.  Serial Electron Diffraction Data Processing With diffractem and CrystFEL.

Authors:  Robert Bücker; Pascal Hogan-Lamarre; R J Dwayne Miller
Journal:  Front Mol Biosci       Date:  2021-05-19
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