Literature DB >> 31345629

The complementarity of serial femtosecond crystallography and MicroED for structure determination from microcrystals.

Nadia A Zatsepin1, Chufeng Li1, Paige Colasurd2, Brent L Nannenga3.   

Abstract

In recent years, nano and microcrystals have emerged as a valuable source of high-resolution structural information owing to the invention of serial femtosecond crystallography (SFX) with X-ray free electron lasers and microcrystal electron diffraction (MicroED) using electron cryomicroscopes. Once considered useless for structure determination, nano/microcrystals now confer significant advantages for static and time-resolved structure determination from a wide variety of difficult-to-study targets. MicroED has been used to obtain sub-Ångstrom resolution maps in which hydrogen atoms can be clearly resolved from only a few nano/microcrystals, while SFX has been used to probe protein dynamics following reaction initiation on time scales from femtoseconds to minutes. We review these two complementary techniques and their abilities for high-resolution structure determination.
Copyright © 2019 Elsevier Ltd. All rights reserved.

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Year:  2019        PMID: 31345629      PMCID: PMC6778504          DOI: 10.1016/j.sbi.2019.06.004

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  68 in total

Review 1.  Liquid sample delivery techniques for serial femtosecond crystallography.

Authors:  Uwe Weierstall
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-07-17       Impact factor: 6.237

2.  Use of transmission electron microscopy to identify nanocrystals of challenging protein targets.

Authors:  Hilary P Stevenson; Alexander M Makhov; Monica Calero; Andrea L Edwards; Oliver B Zeldin; Irimpan I Mathews; Guowu Lin; Christopher O Barnes; Hugo Santamaria; Ted M Ross; S Michael Soltis; Chaitan Khosla; V Nagarajan; James F Conway; Aina E Cohen; Guillermo Calero
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-28       Impact factor: 11.205

3.  Transmission electron microscopy for the evaluation and optimization of crystal growth.

Authors:  Hilary P Stevenson; Guowu Lin; Christopher O Barnes; Ieva Sutkeviciute; Troy Krzysiak; Simon C Weiss; Shelley Reynolds; Ying Wu; Veeranagu Nagarajan; Alexander M Makhov; Robert Lawrence; Emily Lamm; Lisa Clark; Timothy J Gardella; Brenda G Hogue; Craig M Ogata; Jinwoo Ahn; Angela M Gronenborn; James F Conway; Jean Pierre Vilardaga; Aina E Cohen; Guillermo Calero
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-04-26       Impact factor: 7.652

4.  Chromophore twisting in the excited state of a photoswitchable fluorescent protein captured by time-resolved serial femtosecond crystallography.

Authors:  Nicolas Coquelle; Michel Sliwa; Joyce Woodhouse; Giorgio Schirò; Virgile Adam; Andrew Aquila; Thomas R M Barends; Sébastien Boutet; Martin Byrdin; Sergio Carbajo; Eugenio De la Mora; R Bruce Doak; Mikolaj Feliks; Franck Fieschi; Lutz Foucar; Virginia Guillon; Mario Hilpert; Mark S Hunter; Stefan Jakobs; Jason E Koglin; Gabriela Kovacsova; Thomas J Lane; Bernard Lévy; Mengning Liang; Karol Nass; Jacqueline Ridard; Joseph S Robinson; Christopher M Roome; Cyril Ruckebusch; Matthew Seaberg; Michel Thepaut; Marco Cammarata; Isabelle Demachy; Martin Field; Robert L Shoeman; Dominique Bourgeois; Jacques-Philippe Colletier; Ilme Schlichting; Martin Weik
Journal:  Nat Chem       Date:  2017-09-11       Impact factor: 24.427

5.  The minimum crystal size needed for a complete diffraction data set.

Authors:  James M Holton; Kenneth A Frankel
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

6.  Modeling truncated pixel values of faint reflections in MicroED images.

Authors:  Johan Hattne; Dan Shi; M Jason de la Cruz; Francis E Reyes; Tamir Gonen
Journal:  J Appl Crystallogr       Date:  2016-05-11       Impact factor: 3.304

7.  Native sulfur/chlorine SAD phasing for serial femtosecond crystallography.

Authors:  Takanori Nakane; Changyong Song; Mamoru Suzuki; Eriko Nango; Jun Kobayashi; Tetsuya Masuda; Shigeyuki Inoue; Eiichi Mizohata; Toru Nakatsu; Tomoyuki Tanaka; Rie Tanaka; Tatsuro Shimamura; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Osamu Nureki; So Iwata; Michihiro Sugahara
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2015-11-27

8.  X-ray lasers for structure and dynamics in biology.

Authors:  John C H Spence
Journal:  IUCrJ       Date:  2018-04-12       Impact factor: 4.769

9.  The CryoEM Method MicroED as a Powerful Tool for Small Molecule Structure Determination.

Authors:  Christopher G Jones; Michael W Martynowycz; Johan Hattne; Tyler J Fulton; Brian M Stoltz; Jose A Rodriguez; Hosea M Nelson; Tamir Gonen
Journal:  ACS Cent Sci       Date:  2018-11-02       Impact factor: 14.553

10.  Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Authors:  Keitaro Yamashita; Naoyuki Kuwabara; Takanori Nakane; Tomohiro Murai; Eiichi Mizohata; Michihiro Sugahara; Dongqing Pan; Tetsuya Masuda; Mamoru Suzuki; Tomomi Sato; Atsushi Kodan; Tomohiro Yamaguchi; Eriko Nango; Tomoyuki Tanaka; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Hiroshi Manya; Tamao Endo; Ryuichi Kato; Toshiya Senda; Hiroaki Kato; So Iwata; Hideo Ago; Masaki Yamamoto; Fumiaki Yumoto; Toru Nakatsu
Journal:  IUCrJ       Date:  2017-08-08       Impact factor: 4.769

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  5 in total

1.  MicroED Sample Preparation and Data Collection For Protein Crystals.

Authors:  Guanhong Bu; Brent L Nannenga
Journal:  Methods Mol Biol       Date:  2021

Review 2.  Beyond history and "on a roll": The list of the most well-studied human protein structures and overall trends in the protein data bank.

Authors:  Zhen-Lu Li; Matthias Buck
Journal:  Protein Sci       Date:  2021-03-04       Impact factor: 6.725

3.  Rapid Structural Analysis of a Synthetic Non-canonical Amino Acid by Microcrystal Electron Diffraction.

Authors:  Patrick R Gleason; Brent L Nannenga; Jeremy H Mills
Journal:  Front Mol Biosci       Date:  2021-01-08

4.  Macromolecular crystallography using microcrystal electron diffraction.

Authors:  Max T B Clabbers; Hongyi Xu
Journal:  Acta Crystallogr D Struct Biol       Date:  2021-02-17       Impact factor: 7.652

5.  Comparing serial X-ray crystallography and microcrystal electron diffraction (MicroED) as methods for routine structure determination from small macromolecular crystals.

Authors:  Alexander M Wolff; Iris D Young; Raymond G Sierra; Aaron S Brewster; Michael W Martynowycz; Eriko Nango; Michihiro Sugahara; Takanori Nakane; Kazutaka Ito; Andrew Aquila; Asmit Bhowmick; Justin T Biel; Sergio Carbajo; Aina E Cohen; Saul Cortez; Ana Gonzalez; Tomoya Hino; Dohyun Im; Jake D Koralek; Minoru Kubo; Tomas S Lazarou; Takashi Nomura; Shigeki Owada; Avi J Samelson; Tomoyuki Tanaka; Rie Tanaka; Erin M Thompson; Henry van den Bedem; Rahel A Woldeyes; Fumiaki Yumoto; Wei Zhao; Kensuke Tono; Sebastien Boutet; So Iwata; Tamir Gonen; Nicholas K Sauter; James S Fraser; Michael C Thompson
Journal:  IUCrJ       Date:  2020-02-26       Impact factor: 4.769

  5 in total

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