Literature DB >> 33543942

Amyloid Oligomers: A Joint Experimental/Computational Perspective on Alzheimer's Disease, Parkinson's Disease, Type II Diabetes, and Amyotrophic Lateral Sclerosis.

Phuong H Nguyen1, Ayyalusamy Ramamoorthy2, Bikash R Sahoo2, Jie Zheng3, Peter Faller4, John E Straub5, Laura Dominguez6, Joan-Emma Shea7, Nikolay V Dokholyan8,9, Alfonso De Simone10,11, Buyong Ma12,13, Ruth Nussinov12,14, Saeed Najafi7, Son Tung Ngo15, Antoine Loquet16, Mara Chiricotto17, Pritam Ganguly7, James McCarty18, Mai Suan Li19,20, Carol Hall21, Yiming Wang21, Yifat Miller22, Simone Melchionna23, Birgit Habenstein16, Stepan Timr1, Jiaxing Chen8, Brianna Hnath8, Birgit Strodel24, Rakez Kayed25, Sylvain Lesné26, Guanghong Wei27, Fabio Sterpone1, Andrew J Doig28, Philippe Derreumaux1,29,30.   

Abstract

Protein misfolding and aggregation is observed in many amyloidogenic diseases affecting either the central nervous system or a variety of peripheral tissues. Structural and dynamic characterization of all species along the pathways from monomers to fibrils is challenging by experimental and computational means because they involve intrinsically disordered proteins in most diseases. Yet understanding how amyloid species become toxic is the challenge in developing a treatment for these diseases. Here we review what computer, in vitro, in vivo, and pharmacological experiments tell us about the accumulation and deposition of the oligomers of the (Aβ, tau), α-synuclein, IAPP, and superoxide dismutase 1 proteins, which have been the mainstream concept underlying Alzheimer's disease (AD), Parkinson's disease (PD), type II diabetes (T2D), and amyotrophic lateral sclerosis (ALS) research, respectively, for many years.

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Year:  2021        PMID: 33543942      PMCID: PMC8836097          DOI: 10.1021/acs.chemrev.0c01122

Source DB:  PubMed          Journal:  Chem Rev        ISSN: 0009-2665            Impact factor:   60.622


  1150 in total

1.  Geometry and symmetry presculpt the free-energy landscape of proteins.

Authors:  Trinh Xuan Hoang; Antonio Trovato; Flavio Seno; Jayanth R Banavar; Amos Maritan
Journal:  Proc Natl Acad Sci U S A       Date:  2004-05-17       Impact factor: 11.205

Review 2.  Mechanical bioeffects of ultrasound.

Authors:  Diane Dalecki
Journal:  Annu Rev Biomed Eng       Date:  2004       Impact factor: 9.590

3.  α-Synuclein in central nervous system and from erythrocytes, mammalian cells, and Escherichia coli exists predominantly as disordered monomer.

Authors:  Bruno Fauvet; Martial K Mbefo; Mohamed-Bilal Fares; Carole Desobry; Sarah Michael; Mustafa T Ardah; Elpida Tsika; Philippe Coune; Michel Prudent; Niels Lion; David Eliezer; Darren J Moore; Bernard Schneider; Patrick Aebischer; Omar M El-Agnaf; Eliezer Masliah; Hilal A Lashuel
Journal:  J Biol Chem       Date:  2012-02-07       Impact factor: 5.157

4.  Amyloid Properties of Asparagine and Glutamine in Prion-like Proteins.

Authors:  Yuan Zhang; Viet Hoang Man; Christopher Roland; Celeste Sagui
Journal:  ACS Chem Neurosci       Date:  2016-03-03       Impact factor: 4.418

Review 5.  The many faces of α-synuclein: from structure and toxicity to therapeutic target.

Authors:  Hilal A Lashuel; Cassia R Overk; Abid Oueslati; Eliezer Masliah
Journal:  Nat Rev Neurosci       Date:  2013-01       Impact factor: 34.870

6.  Transient Secondary and Tertiary Structure Formation Kinetics in the Intrinsically Disordered State of α-Synuclein from Atomistic Simulations.

Authors:  Timo Graen; Reinhard Klement; Asaf Grupi; Elisha Haas; Helmut Grubmüller
Journal:  Chemphyschem       Date:  2018-07-25       Impact factor: 3.102

Review 7.  Biology and genetics of prions causing neurodegeneration.

Authors:  Stanley B Prusiner
Journal:  Annu Rev Genet       Date:  2013       Impact factor: 16.830

8.  Structural characterization of toxic oligomers that are kinetically trapped during α-synuclein fibril formation.

Authors:  Serene W Chen; Srdja Drakulic; Emma Deas; Myriam Ouberai; Francesco A Aprile; Rocío Arranz; Samuel Ness; Cintia Roodveldt; Tim Guilliams; Erwin J De-Genst; David Klenerman; Nicholas W Wood; Tuomas P J Knowles; Carlos Alfonso; Germán Rivas; Andrey Y Abramov; José María Valpuesta; Christopher M Dobson; Nunilo Cremades
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-08       Impact factor: 11.205

9.  Interactions between amyloid-β and Tau fragments promote aberrant aggregates: implications for amyloid toxicity.

Authors:  Thanh D Do; Nicholas J Economou; Ali Chamas; Steven K Buratto; Joan-Emma Shea; Michael T Bowers
Journal:  J Phys Chem B       Date:  2014-09-15       Impact factor: 2.991

10.  Safety and tolerability of BAN2401--a clinical study in Alzheimer's disease with a protofibril selective Aβ antibody.

Authors:  Veronika Logovinsky; Andrew Satlin; Robert Lai; Chad Swanson; June Kaplow; Gunilla Osswald; Hans Basun; Lars Lannfelt
Journal:  Alzheimers Res Ther       Date:  2016-04-06       Impact factor: 8.823

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  56 in total

Review 1.  Recent advancements in chromone as a privileged scaffold towards the development of small molecules for neurodegenerative therapeutics.

Authors:  Hari Madhav; Ehtesham Jameel; Mohammad Rehan; Nasimul Hoda
Journal:  RSC Med Chem       Date:  2022-01-31

2.  In silico screening of potential β-secretase (BACE1) inhibitors from VIETHERB database.

Authors:  Nguyen Thao Nhung; Nhung Duong; Huong Thi Thu Phung; Quan V Vo; Nguyen Minh Tam
Journal:  J Mol Model       Date:  2022-02-14       Impact factor: 1.810

3.  Dynamics of Amyloid Formation from Simplified Representation to Atomistic Simulations.

Authors:  Phuong Hoang Nguyen; Pierre Tufféry; Philippe Derreumaux
Journal:  Methods Mol Biol       Date:  2022

4.  A buried glutamate in the cross-β core renders β-endorphin fibrils reversible.

Authors:  Yuying Liu; Yu Zhang; Yunxiang Sun; Feng Ding
Journal:  Nanoscale       Date:  2021-12-02       Impact factor: 7.790

5.  Impact of Electronic Polarization on Preformed, β-Strand Rich Homogenous and Heterogenous Amyloid Oligomers.

Authors:  Kelsie M King; Amanda K Sharp; Darcy S Davidson; Anne M Brown; Justin A Lemkul
Journal:  J Comput Biophys Chem       Date:  2021-12-29

6.  α-synuclein-assisted oligomerization of β-amyloid (1-42).

Authors:  Edward Chau; Jin Ryoun Kim
Journal:  Arch Biochem Biophys       Date:  2022-01-15       Impact factor: 4.013

7.  Graphene quantum dots obstruct the membrane axis of Alzheimer's amyloid beta.

Authors:  Huayuan Tang; Yuhuan Li; Aleksandr Kakinen; Nicholas Andrikopoulos; Yunxiang Sun; Eunbi Kwak; Thomas P Davis; Feng Ding; Pu Chun Ke
Journal:  Phys Chem Chem Phys       Date:  2021-12-22       Impact factor: 3.676

8.  Protein Amyloid Cofactors: Charged Side-Chain Arrays Meet Their Match?

Authors:  Emily Lewkowicz; Shobini Jayaraman; Olga Gursky
Journal:  Trends Biochem Sci       Date:  2021-06-28       Impact factor: 13.807

9.  Insights Into the Micelle-Induced β-Hairpin-to-α-Helix Transition of a LytA-Derived Peptide by Photo-CIDNP Spectroscopy.

Authors:  M Victoria Gomez; Margarita Ruiz-Castañeda; Philipp Nitschke; Ruth M Gschwind; M Angeles Jiménez
Journal:  Int J Mol Sci       Date:  2021-06-22       Impact factor: 5.923

10.  Ultrasmall Molybdenum Disulfide Quantum Dots Cage Alzheimer's Amyloid Beta to Restore Membrane Fluidity.

Authors:  Yuhuan Li; Huayuan Tang; Houjuan Zhu; Aleksandr Kakinen; Di Wang; Nicholas Andrikopoulos; Yunxiang Sun; Aparna Nandakumar; Eunbi Kwak; Thomas P Davis; David Tai Leong; Feng Ding; Pu Chun Ke
Journal:  ACS Appl Mater Interfaces       Date:  2021-06-18       Impact factor: 10.383

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