Literature DB >> 28630883

Detection of prostate cancer in multiparametric MRI using random forest with instance weighting.

Nathan Lay1, Yohannes Tsehay1, Matthew D Greer2, Baris Turkbey2, Jin Tae Kwak3, Peter L Choyke2, Peter Pinto2, Bradford J Wood3, Ronald M Summers1.   

Abstract

A prostate computer-aided diagnosis (CAD) based on random forest to detect prostate cancer using a combination of spatial, intensity, and texture features extracted from three sequences, T2W, ADC, and B2000 images, is proposed. The random forest training considers instance-level weighting for equal treatment of small and large cancerous lesions as well as small and large prostate backgrounds. Two other approaches, based on an AutoContext pipeline intended to make better use of sequence-specific patterns, were considered. One pipeline uses random forest on individual sequences while the other uses an image filter described to produce probability map-like images. These were compared to a previously published CAD approach based on support vector machine (SVM) evaluated on the same data. The random forest, features, sampling strategy, and instance-level weighting improve prostate cancer detection performance [area under the curve (AUC) 0.93] in comparison to SVM (AUC 0.86) on the same test data. Using a simple image filtering technique as a first-stage detector to highlight likely regions of prostate cancer helps with learning stability over using a learning-based approach owing to visibility and ambiguity of annotations in each sequence.

Entities:  

Keywords:  computer-aided diagnosis; multiparametric MRI; prostate

Year:  2017        PMID: 28630883      PMCID: PMC5467765          DOI: 10.1117/1.JMI.4.2.024506

Source DB:  PubMed          Journal:  J Med Imaging (Bellingham)        ISSN: 2329-4302


  15 in total

1.  Observer studies involving detection and localization: modeling, analysis, and validation.

Authors:  Dev P Chakraborty; Kevin S Berbaum
Journal:  Med Phys       Date:  2004-08       Impact factor: 4.071

2.  Auto-context and its application to high-level vision tasks and 3D brain image segmentation.

Authors:  Zhuowen Tu; Xiang Bai
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2010-10       Impact factor: 6.226

3.  A critical analysis of the tumor volume threshold for clinically insignificant prostate cancer using a data set of a randomized screening trial.

Authors:  Tineke Wolters; Monique J Roobol; Pim J van Leeuwen; Roderick C N van den Bergh; Robert F Hoedemaeker; Geert J L H van Leenders; Fritz H Schröder; Theodorus H van der Kwast
Journal:  J Urol       Date:  2010-11-12       Impact factor: 7.450

4.  Haralick texture analysis of prostate MRI: utility for differentiating non-cancerous prostate from prostate cancer and differentiating prostate cancers with different Gleason scores.

Authors:  Andreas Wibmer; Hedvig Hricak; Tatsuo Gondo; Kazuhiro Matsumoto; Harini Veeraraghavan; Duc Fehr; Junting Zheng; Debra Goldman; Chaya Moskowitz; Samson W Fine; Victor E Reuter; James Eastham; Evis Sala; Hebert Alberto Vargas
Journal:  Eur Radiol       Date:  2015-05-21       Impact factor: 5.315

Review 5.  MR Imaging-Transrectal US Fusion for Targeted Prostate Biopsies: Implications for Diagnosis and Clinical Management.

Authors:  Daniel N Costa; Ivan Pedrosa; Francisco Donato; Claus G Roehrborn; Neil M Rofsky
Journal:  Radiographics       Date:  2015-03-18       Impact factor: 5.333

6.  Automated prostate cancer detection using T2-weighted and high-b-value diffusion-weighted magnetic resonance imaging.

Authors:  Jin Tae Kwak; Sheng Xu; Bradford J Wood; Baris Turkbey; Peter L Choyke; Peter A Pinto; Shijun Wang; Ronald M Summers
Journal:  Med Phys       Date:  2015-05       Impact factor: 4.071

7.  Missing the Mark: Prostate Cancer Upgrading by Systematic Biopsy over Magnetic Resonance Imaging/Transrectal Ultrasound Fusion Biopsy.

Authors:  Akhil Muthigi; Arvin K George; Abhinav Sidana; Michael Kongnyuy; Richard Simon; Vanessa Moreno; Maria J Merino; Peter L Choyke; Baris Turkbey; Bradford J Wood; Peter A Pinto
Journal:  J Urol       Date:  2016-08-28       Impact factor: 7.450

8.  Computer-aided detection of prostate cancer in MRI.

Authors:  Geert Litjens; Oscar Debats; Jelle Barentsz; Nico Karssemeijer; Henkjan Huisman
Journal:  IEEE Trans Med Imaging       Date:  2014-05       Impact factor: 10.048

Review 9.  Prostate cancer epidemiology.

Authors:  Henrik Grönberg
Journal:  Lancet       Date:  2003-03-08       Impact factor: 79.321

10.  Automatic classification of prostate cancer Gleason scores from multiparametric magnetic resonance images.

Authors:  Duc Fehr; Harini Veeraraghavan; Andreas Wibmer; Tatsuo Gondo; Kazuhiro Matsumoto; Herbert Alberto Vargas; Evis Sala; Hedvig Hricak; Joseph O Deasy
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-02       Impact factor: 11.205

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  15 in total

1.  Computer-aided diagnosis prior to conventional interpretation of prostate mpMRI: an international multi-reader study.

Authors:  Matthew D Greer; Nathan Lay; Joanna H Shih; Tristan Barrett; Leonardo Kayat Bittencourt; Samuel Borofsky; Ismail Kabakus; Yan Mee Law; Jamie Marko; Haytham Shebel; Francesca V Mertan; Maria J Merino; Bradford J Wood; Peter A Pinto; Ronald M Summers; Peter L Choyke; Baris Turkbey
Journal:  Eur Radiol       Date:  2018-04-12       Impact factor: 5.315

2.  PROSTATEx Challenges for computerized classification of prostate lesions from multiparametric magnetic resonance images.

Authors:  Samuel G Armato; Henkjan Huisman; Karen Drukker; Lubomir Hadjiiski; Justin S Kirby; Nicholas Petrick; George Redmond; Maryellen L Giger; Kenny Cha; Artem Mamonov; Jayashree Kalpathy-Cramer; Keyvan Farahani
Journal:  J Med Imaging (Bellingham)       Date:  2018-11-10

Review 3.  Future Perspectives and Challenges of Prostate MR Imaging.

Authors:  Baris Turkbey; Peter L Choyke
Journal:  Radiol Clin North Am       Date:  2017-12-09       Impact factor: 2.303

4.  Prostate cancer detection from multi-institution multiparametric MRIs using deep convolutional neural networks.

Authors:  Yohan Sumathipala; Nathan Lay; Baris Turkbey; Clayton Smith; Peter L Choyke; Ronald M Summers
Journal:  J Med Imaging (Bellingham)       Date:  2018-12-15

Review 5.  Artificial intelligence at the intersection of pathology and radiology in prostate cancer.

Authors:  Stephnie A Harmon; Sena Tuncer; Thomas Sanford; Peter L Choyke; Barış Türkbey
Journal:  Diagn Interv Radiol       Date:  2019-05       Impact factor: 2.630

Review 6.  Applications of Artificial Intelligence to Prostate Multiparametric MRI (mpMRI): Current and Emerging Trends.

Authors:  Michelle D Bardis; Roozbeh Houshyar; Peter D Chang; Alexander Ushinsky; Justin Glavis-Bloom; Chantal Chahine; Thanh-Lan Bui; Mark Rupasinghe; Christopher G Filippi; Daniel S Chow
Journal:  Cancers (Basel)       Date:  2020-05-11       Impact factor: 6.639

Review 7.  Artificial Intelligence Based Algorithms for Prostate Cancer Classification and Detection on Magnetic Resonance Imaging: A Narrative Review.

Authors:  Jasper J Twilt; Kicky G van Leeuwen; Henkjan J Huisman; Jurgen J Fütterer; Maarten de Rooij
Journal:  Diagnostics (Basel)       Date:  2021-05-26

8.  Multicenter Multireader Evaluation of an Artificial Intelligence-Based Attention Mapping System for the Detection of Prostate Cancer With Multiparametric MRI.

Authors:  Sherif Mehralivand; Stephanie A Harmon; Joanna H Shih; Clayton P Smith; Nathan Lay; Burak Argun; Sandra Bednarova; Ronaldo Hueb Baroni; Abdullah Erdem Canda; Karabekir Ercan; Rossano Girometti; Ercan Karaarslan; Ali Riza Kural; Andrei S Purysko; Soroush Rais-Bahrami; Victor Martins Tonso; Cristina Magi-Galluzzi; Jennifer B Gordetsky; Ricardo Silvestre E Silva Macarenco; Maria J Merino; Berrak Gumuskaya; Yesim Saglican; Stefano Sioletic; Anne Y Warren; Tristan Barrett; Leonardo Bittencourt; Mehmet Coskun; Chris Knauss; Yan Mee Law; Ashkan A Malayeri; Daniel J Margolis; Jamie Marko; Derya Yakar; Bradford J Wood; Peter A Pinto; Peter L Choyke; Ronald M Summers; Baris Turkbey
Journal:  AJR Am J Roentgenol       Date:  2020-08-05       Impact factor: 3.959

9.  Can computer-aided diagnosis assist in the identification of prostate cancer on prostate MRI? a multi-center, multi-reader investigation.

Authors:  Sonia Gaur; Nathan Lay; Stephanie A Harmon; Sreya Doddakashi; Sherif Mehralivand; Burak Argun; Tristan Barrett; Sandra Bednarova; Rossanno Girometti; Ercan Karaarslan; Ali Riza Kural; Aytekin Oto; Andrei S Purysko; Tatjana Antic; Cristina Magi-Galluzzi; Yesim Saglican; Stefano Sioletic; Anne Y Warren; Leonardo Bittencourt; Jurgen J Fütterer; Rajan T Gupta; Ismail Kabakus; Yan Mee Law; Daniel J Margolis; Haytham Shebel; Antonio C Westphalen; Bradford J Wood; Peter A Pinto; Joanna H Shih; Peter L Choyke; Ronald M Summers; Baris Turkbey
Journal:  Oncotarget       Date:  2018-09-18

10.  Dr. Answer AI for Prostate Cancer: Predicting Biochemical Recurrence Following Radical Prostatectomy.

Authors:  Jihwan Park; Mi Jung Rho; Hyong Woo Moon; Jaewon Kim; Chanjung Lee; Dongbum Kim; Choung-Soo Kim; Seong Soo Jeon; Minyong Kang; Ji Youl Lee
Journal:  Technol Cancer Res Treat       Date:  2021 Jan-Dec
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