Literature DB >> 27806259

Antibody-Based Affinity Cryoelectron Microscopy at 2.6-Å Resolution.

Guimei Yu1, Kunpeng Li1, Pengwei Huang2, Xi Jiang2, Wen Jiang3.   

Abstract

The affinity cryoelectron microscopy (cryo-EM) approach has been explored in recent years to simplify and/or improve the sample preparation for cryo-EM, which can bring previously challenging specimens such as those of low abundance and/or unpurified ones within reach of the cryo-EM technique. Despite the demonstrated successes for solving structures to low to intermediate resolutions, the lack of near-atomic structures using this approach has led to a common perception of affinity cryo-EM as a niche technique incapable of reaching high resolutions. Here, we report a ∼2.6-Å structure solved using the antibody-based affinity grid approach with low-concentration Tulane virus purified from a low-yield cell-culture system that has been challenging to standard cryo-EM grid preparation. Quantitative analyses of the structure indicate data and reconstruction quality comparable with the conventional grid preparation method using samples at high concentration.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Tulane virus; affinity cryoelectron microscopy; antibody-based affinity grid; single-particle 3D reconstruction

Mesh:

Substances:

Year:  2016        PMID: 27806259      PMCID: PMC5123806          DOI: 10.1016/j.str.2016.09.008

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  38 in total

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2.  How good can cryo-EM become?

Authors:  Robert M Glaeser
Journal:  Nat Methods       Date:  2016-01       Impact factor: 28.547

3.  Image formation modeling in cryo-electron microscopy.

Authors:  Miloš Vulović; Raimond B G Ravelli; Lucas J van Vliet; Abraham J Koster; Ivan Lazić; Uwe Lücken; Hans Rullgård; Ozan Öktem; Bernd Rieger
Journal:  J Struct Biol       Date:  2013-05-25       Impact factor: 2.867

4.  Single particle cryo-electron microscopy and 3-D reconstruction of viruses.

Authors:  Fei Guo; Wen Jiang
Journal:  Methods Mol Biol       Date:  2014

5.  Single-step antibody-based affinity cryo-electron microscopy for imaging and structural analysis of macromolecular assemblies.

Authors:  Guimei Yu; Frank Vago; Dongsheng Zhang; Jonathan E Snyder; Rui Yan; Ci Zhang; Christopher Benjamin; Xi Jiang; Richard J Kuhn; Philip Serwer; David H Thompson; Wen Jiang
Journal:  J Struct Biol       Date:  2014-04-26       Impact factor: 2.867

6.  A graph theory method for determination of cryo-EM image focuses.

Authors:  Wen Jiang; Fei Guo; Zheng Liu
Journal:  J Struct Biol       Date:  2012-07-27       Impact factor: 2.867

7.  Antibody-based affinity cryo-EM grid.

Authors:  Guimei Yu; Kunpeng Li; Wen Jiang
Journal:  Methods       Date:  2016-01-21       Impact factor: 3.608

8.  RELION: implementation of a Bayesian approach to cryo-EM structure determination.

Authors:  Sjors H W Scheres
Journal:  J Struct Biol       Date:  2012-09-19       Impact factor: 2.867

9.  Cryo-EM single particle analysis with the Volta phase plate.

Authors:  Radostin Danev; Wolfgang Baumeister
Journal:  Elife       Date:  2016-03-07       Impact factor: 8.140

10.  Volta phase plate cryo-EM of the small protein complex Prx3.

Authors:  Maryam Khoshouei; Mazdak Radjainia; Amy J Phillips; Juliet A Gerrard; Alok K Mitra; Jürgen M Plitzko; Wolfgang Baumeister; Radostin Danev
Journal:  Nat Commun       Date:  2016-01-28       Impact factor: 14.919

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  16 in total

1.  A novel storage system for cryoEM samples.

Authors:  Giovanna Scapin; Winifred W Prosise; Michael K Wismer; Corey Strickland
Journal:  J Struct Biol       Date:  2017-04-19       Impact factor: 2.867

Review 2.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

Review 3.  Structural Variability in the RLR-MAVS Pathway and Sensitive Detection of Viral RNAs.

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Journal:  Med Chem       Date:  2019       Impact factor: 2.745

Review 4.  Atomic cryo-EM structures of viruses.

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Journal:  Curr Opin Struct Biol       Date:  2017-08-05       Impact factor: 6.809

5.  Structural and biophysical characterizations of HIV-1 matrix trimer binding to lipid nanodiscs shed light on virus assembly.

Authors:  R Elliot Murphy; Alexandra B Samal; Jiri Vlach; Vicente Mas; Peter E Prevelige; Jamil S Saad
Journal:  J Biol Chem       Date:  2019-10-22       Impact factor: 5.157

6.  Routine determination of ice thickness for cryo-EM grids.

Authors:  William J Rice; Anchi Cheng; Alex J Noble; Edward T Eng; Laura Y Kim; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2018-07-04       Impact factor: 2.867

Review 7.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

8.  From Tube to Structure: SPA Cryo-EM Workflow Using Apoferritin as an Example.

Authors:  Christoph A Diebolder; Rebecca S Dillard; Ludovic Renault
Journal:  Methods Mol Biol       Date:  2021

Review 9.  Cryo-EM: beyond the microscope.

Authors:  Lesley A Earl; Veronica Falconieri; Jacqueline Ls Milne; Sriram Subramaniam
Journal:  Curr Opin Struct Biol       Date:  2017-06-21       Impact factor: 6.809

10.  Preparation of Tunable Microchips to Visualize Native Protein Complexes for Single-Particle Electron Microscopy.

Authors:  Brian L Gilmore; A Cameron Varano; William Dearnaley; Yanping Liang; Bridget C Marcinkowski; Madeline J Dukes; Deborah F Kelly
Journal:  Methods Mol Biol       Date:  2018
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