Literature DB >> 29605907

Preparation of Tunable Microchips to Visualize Native Protein Complexes for Single-Particle Electron Microscopy.

Brian L Gilmore1, A Cameron Varano1,2, William Dearnaley1, Yanping Liang1, Bridget C Marcinkowski1, Madeline J Dukes3, Deborah F Kelly4,5.   

Abstract

Recent advances in technology have enabled single-particle electron microscopy (EM) to rapidly progress as a preferred tool to study protein assemblies. Newly developed materials and methods present viable alternatives to traditional EM specimen preparation. Improved lipid monolayer purification reagents offer considerable flexibility, while ultrathin silicon nitride films provide superior imaging properties to the structural study of protein complexes. Here, we describe the steps for combining monolayer purification with silicon nitride microchips to create a tunable approach for the EM community.

Entities:  

Keywords:  Affinity capture; Electron microscopy; Microchips; Protein assemblies; Silicon nitride; Single-particle analysis

Mesh:

Substances:

Year:  2018        PMID: 29605907      PMCID: PMC5947846          DOI: 10.1007/978-1-4939-7759-8_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

1.  Visualizing viral assemblies in a nanoscale biosphere.

Authors:  Brian L Gilmore; Shannon P Showalter; Madeline J Dukes; Justin R Tanner; Andrew C Demmert; Sarah M McDonald; Deborah F Kelly
Journal:  Lab Chip       Date:  2012-12-03       Impact factor: 6.799

Review 2.  Single-particle reconstruction of biological macromolecules in electron microscopy--30 years.

Authors:  Joachim Frank
Journal:  Q Rev Biophys       Date:  2009-08       Impact factor: 5.318

3.  Real-time visualization of nanoparticles interacting with glioblastoma stem cells.

Authors:  Elliot S Pohlmann; Kaya Patel; Sujuan Guo; Madeline J Dukes; Zhi Sheng; Deborah F Kelly
Journal:  Nano Lett       Date:  2015-03-06       Impact factor: 11.189

4.  Monolayer purification: a rapid method for isolating protein complexes for single-particle electron microscopy.

Authors:  Deborah F Kelly; Danijela Dukovski; Thomas Walz
Journal:  Proc Natl Acad Sci U S A       Date:  2008-03-17       Impact factor: 11.205

5.  Molecular structure and dimeric organization of the Notch extracellular domain as revealed by electron microscopy.

Authors:  Deborah F Kelly; Robert J Lake; Teije C Middelkoop; Hua-Ying Fan; Spyros Artavanis-Tsakonas; Thomas Walz
Journal:  PLoS One       Date:  2010-05-07       Impact factor: 3.240

6.  The Affinity Grid: a pre-fabricated EM grid for monolayer purification.

Authors:  Deborah F Kelly; Priyanka D Abeyrathne; Danijela Dukovski; Thomas Walz
Journal:  J Mol Biol       Date:  2008-07-16       Impact factor: 5.469

7.  Capturing RNA-dependent pathways for cryo-EM analysis.

Authors:  Justin R Tanner; Katherine Degen; Brian L Gilmore; Deborah F Kelly
Journal:  Comput Struct Biotechnol J       Date:  2012-02-23       Impact factor: 7.271

8.  A microchip platform for structural oncology applications.

Authors:  Carly E Winton; Brian L Gilmore; Andrew C Demmert; Vasilea Karageorge; Zhi Sheng; Deborah F Kelly
Journal:  NPJ Breast Cancer       Date:  2016-06-15

9.  Molecular Analysis of BRCA1 in Human Breast Cancer Cells Under Oxidative Stress.

Authors:  Brian L Gilmore; Yanping Liang; Carly E Winton; Kaya Patel; Vasilea Karageorge; A Cameron Varano; William Dearnaley; Zhi Sheng; Deborah F Kelly
Journal:  Sci Rep       Date:  2017-03-06       Impact factor: 4.379

10.  Affinity grid-based cryo-EM of PKC binding to RACK1 on the ribosome.

Authors:  Gyanesh Sharma; Jesper Pallesen; Sanchaita Das; Robert Grassucci; Robert Langlois; Cheri M Hampton; Deborah F Kelly; Amedee des Georges; Joachim Frank
Journal:  J Struct Biol       Date:  2012-12-08       Impact factor: 2.867

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  3 in total

1.  Cryo-EM-On-a-Chip: Custom-Designed Substrates for the 3D Analysis of Macromolecules.

Authors:  Nick A Alden; A Cameron Varano; William J Dearnaley; Maria J Solares; William Y Luqiu; Yanping Liang; Zhi Sheng; Sarah M McDonald; John Damiano; Jennifer McConnell; Madeline J Dukes; Deborah F Kelly
Journal:  Small       Date:  2019-04-08       Impact factor: 13.281

2.  High-Resolution Imaging of Human Cancer Proteins Using Microprocessor Materials.

Authors:  Maria J Solares; G M Jonaid; William Y Luqiu; Samantha Berry; Janki Khadela; Yanping Liang; Madison C Evans; Kevin J Pridham; William J Dearnaley; Zhi Sheng; Deborah F Kelly
Journal:  Chembiochem       Date:  2022-07-14       Impact factor: 3.461

3.  Microchip-Based Structure Determination of Disease-Relevant p53.

Authors:  Maria J Solares; G M Jonaid; William Y Luqiu; Yanping Liang; Madison C Evans; William J Dearnaley; Zhi Sheng; Deborah F Kelly
Journal:  Anal Chem       Date:  2020-10-30       Impact factor: 6.986

  3 in total

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