Literature DB >> 30175702

Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Rebecca S Dillard1, Cheri M Hampton1, Joshua D Strauss1, Zunlong Ke1, Deanna Altomara1, Ricardo C Guerrero-Ferreira1, Gabriella Kiss1, Elizabeth R Wright1.   

Abstract

Cryo-electron microscopy (cryo-EM) is a powerful tool for macromolecular to near-atomic resolution structure determination in the biological sciences. The specimen is maintained in a near-native environment within a thin film of vitreous ice and imaged in a transmission electron microscope. The images can then be processed by a number of computational methods to produce three-dimensional information. Recent advances in sample preparation, imaging, and data processing have led to tremendous growth in the field of cryo-EM by providing higher resolution structures and the ability to investigate macromolecules within the context of the cell. Here, we review developments in sample preparation methods and substrates, detectors, phase plates, and cryo-correlative light and electron microscopy that have contributed to this expansion. We also have included specific biological applications.

Entities:  

Keywords:  cryo-correlative light and electron microscopy (cryo-CLEM); cryo-electron microscopy (cryo-EM); cryo-electron tomography (cryo-ET); direct electron detectors; phase plates; transmission electron microscopy (TEM); vitrification

Mesh:

Substances:

Year:  2018        PMID: 30175702      PMCID: PMC6265046          DOI: 10.1017/S1431927618012382

Source DB:  PubMed          Journal:  Microsc Microanal        ISSN: 1431-9276            Impact factor:   4.127


  196 in total

1.  Assembly of a nucleus-like structure during viral replication in bacteria.

Authors:  Vorrapon Chaikeeratisak; Katrina Nguyen; Kanika Khanna; Axel F Brilot; Marcella L Erb; Joanna K C Coker; Anastasia Vavilina; Gerald L Newton; Robert Buschauer; Kit Pogliano; Elizabeth Villa; David A Agard; Joe Pogliano
Journal:  Science       Date:  2017-01-13       Impact factor: 47.728

2.  Molecular architecture of the human U4/U6.U5 tri-snRNP.

Authors:  Dmitry E Agafonov; Berthold Kastner; Olexandr Dybkov; Romina V Hofele; Wen-Ti Liu; Henning Urlaub; Reinhard Lührmann; Holger Stark
Journal:  Science       Date:  2016-02-18       Impact factor: 47.728

3.  Electron microscopy of frozen biological suspensions.

Authors:  J Lepault; F P Booy; J Dubochet
Journal:  J Microsc       Date:  1983-01       Impact factor: 1.758

4.  Cryo-EM Structures of the Magnesium Channel CorA Reveal Symmetry Break upon Gating.

Authors:  Doreen Matthies; Olivier Dalmas; Mario J Borgnia; Pawel K Dominik; Alan Merk; Prashant Rao; Bharat G Reddy; Shahidul Islam; Alberto Bartesaghi; Eduardo Perozo; Sriram Subramaniam
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

5.  Cryomesh: a new substrate for cryo-electron microscopy.

Authors:  Craig Yoshioka; Bridget Carragher; Clinton S Potter
Journal:  Microsc Microanal       Date:  2010-02       Impact factor: 4.127

6.  Antibody-based affinity cryo-EM grid.

Authors:  Guimei Yu; Kunpeng Li; Wen Jiang
Journal:  Methods       Date:  2016-01-21       Impact factor: 3.608

7.  Correlated cryo-fluorescence and cryo-electron microscopy with high spatial precision and improved sensitivity.

Authors:  Martin Schorb; John A G Briggs
Journal:  Ultramicroscopy       Date:  2013-11-11       Impact factor: 2.689

8.  CTFFIND4: Fast and accurate defocus estimation from electron micrographs.

Authors:  Alexis Rohou; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2015-08-13       Impact factor: 2.867

9.  Correlated cryogenic photoactivated localization microscopy and cryo-electron tomography.

Authors:  Yi-Wei Chang; Songye Chen; Elitza I Tocheva; Anke Treuner-Lange; Stephanie Löbach; Lotte Søgaard-Andersen; Grant J Jensen
Journal:  Nat Methods       Date:  2014-05-11       Impact factor: 28.547

10.  Volta phase plate cryo-EM of the small protein complex Prx3.

Authors:  Maryam Khoshouei; Mazdak Radjainia; Amy J Phillips; Juliet A Gerrard; Alok K Mitra; Jürgen M Plitzko; Wolfgang Baumeister; Radostin Danev
Journal:  Nat Commun       Date:  2016-01-28       Impact factor: 14.919

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  3 in total

Review 1.  Broadening access to cryoEM through centralized facilities.

Authors:  Christina M Zimanyi; Mykhailo Kopylov; Clinton S Potter; Bridget Carragher; Edward T Eng
Journal:  Trends Biochem Sci       Date:  2022-02       Impact factor: 13.807

Review 2.  Structural proteomics, electron cryo-microscopy and structural modeling approaches in bacteria-human protein interactions.

Authors:  Sounak Chowdhury; Lotta Happonen; Hamed Khakzad; Lars Malmström; Johan Malmström
Journal:  Med Microbiol Immunol       Date:  2020-02-19       Impact factor: 3.402

3.  CorRelator: Interactive software for real-time high precision cryo-correlative light and electron microscopy.

Authors:  Jie E Yang; Matthew R Larson; Bryan S Sibert; Samantha Shrum; Elizabeth R Wright
Journal:  J Struct Biol       Date:  2021-02-18       Impact factor: 3.234

  3 in total

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