Literature DB >> 28646653

Cryo-EM: beyond the microscope.

Lesley A Earl1, Veronica Falconieri1, Jacqueline Ls Milne1, Sriram Subramaniam2.   

Abstract

The pace at which cryo-EM is being adopted as a mainstream tool in structural biology has continued unabated over the past year. Initial successes in obtaining near-atomic resolution structures with cryo-EM were enabled to a large extent by advances in microscope and detector technology. Here, we review some of the complementary technical improvements that are helping sustain the cryo-EM revolution. We highlight advances in image processing that permit high resolution structure determination even in the presence of structural and conformational heterogeneity. We also review selected examples where biochemical strategies for membrane protein stabilization facilitate cryo-EM structure determination, and discuss emerging approaches for further improving the preparation of reliable plunge-frozen specimens. Published by Elsevier Ltd.

Entities:  

Mesh:

Substances:

Year:  2017        PMID: 28646653      PMCID: PMC5683925          DOI: 10.1016/j.sbi.2017.06.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  71 in total

1.  Structural basis for the gating mechanism of the type 2 ryanodine receptor RyR2.

Authors:  Wei Peng; Huaizong Shen; Jianping Wu; Wenting Guo; Xiaojing Pan; Ruiwu Wang; S R Wayne Chen; Nieng Yan
Journal:  Science       Date:  2016-09-22       Impact factor: 47.728

2.  Molecular architecture of the human U4/U6.U5 tri-snRNP.

Authors:  Dmitry E Agafonov; Berthold Kastner; Olexandr Dybkov; Romina V Hofele; Wen-Ti Liu; Henning Urlaub; Reinhard Lührmann; Holger Stark
Journal:  Science       Date:  2016-02-18       Impact factor: 47.728

3.  Cryo-EM Structures of the Magnesium Channel CorA Reveal Symmetry Break upon Gating.

Authors:  Doreen Matthies; Olivier Dalmas; Mario J Borgnia; Pawel K Dominik; Alan Merk; Prashant Rao; Bharat G Reddy; Shahidul Islam; Alberto Bartesaghi; Eduardo Perozo; Sriram Subramaniam
Journal:  Cell       Date:  2016-02-11       Impact factor: 41.582

4.  Modular Assembly of the Bacterial Large Ribosomal Subunit.

Authors:  Joseph H Davis; Yong Zi Tan; Bridget Carragher; Clinton S Potter; Dmitry Lyumkis; James R Williamson
Journal:  Cell       Date:  2016-12-01       Impact factor: 41.582

5.  Antibody-based affinity cryo-EM grid.

Authors:  Guimei Yu; Kunpeng Li; Wen Jiang
Journal:  Methods       Date:  2016-01-21       Impact factor: 3.608

Review 6.  Protein crystallography for aspiring crystallographers or how to avoid pitfalls and traps in macromolecular structure determination.

Authors:  Alexander Wlodawer; Wladek Minor; Zbigniew Dauter; Mariusz Jaskolski
Journal:  FEBS J       Date:  2013-09-18       Impact factor: 5.542

7.  Cryo-EM structure of Hepatitis C virus IRES bound to the human ribosome at 3.9-Å resolution.

Authors:  Nick Quade; Daniel Boehringer; Marc Leibundgut; Joop van den Heuvel; Nenad Ban
Journal:  Nat Commun       Date:  2015-07-08       Impact factor: 14.919

Review 8.  Progress towards an optimal specimen support for electron cryomicroscopy.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Curr Opin Struct Biol       Date:  2016-01-14       Impact factor: 6.809

9.  TRPV1 structures in nanodiscs reveal mechanisms of ligand and lipid action.

Authors:  Yuan Gao; Erhu Cao; David Julius; Yifan Cheng
Journal:  Nature       Date:  2016-05-18       Impact factor: 49.962

10.  Structural insights into Ca(2+)-activated long-range allosteric channel gating of RyR1.

Authors:  Risheng Wei; Xue Wang; Yan Zhang; Saptarshi Mukherjee; Lei Zhang; Qiang Chen; Xinrui Huang; Shan Jing; Congcong Liu; Shuang Li; Guangyu Wang; Yaofang Xu; Sujie Zhu; Alan J Williams; Fei Sun; Chang-Cheng Yin
Journal:  Cell Res       Date:  2016-08-30       Impact factor: 25.617

View more
  26 in total

1.  Cryo_fit: Democratization of flexible fitting for cryo-EM.

Authors:  Doo Nam Kim; Nigel W Moriarty; Serdal Kirmizialtin; Pavel V Afonine; Billy Poon; Oleg V Sobolev; Paul D Adams; Karissa Sanbonmatsu
Journal:  J Struct Biol       Date:  2019-07-03       Impact factor: 2.867

Review 2.  Ras-Specific GTPase-Activating Proteins-Structures, Mechanisms, and Interactions.

Authors:  Klaus Scheffzek; Giridhar Shivalingaiah
Journal:  Cold Spring Harb Perspect Med       Date:  2019-03-01       Impact factor: 6.915

3.  Structural and functional analyses of the spliceosome requires a multi-disciplinary approach.

Authors:  Melanie D Ohi
Journal:  Methods       Date:  2017-08-01       Impact factor: 3.608

4.  Routine determination of ice thickness for cryo-EM grids.

Authors:  William J Rice; Anchi Cheng; Alex J Noble; Edward T Eng; Laura Y Kim; Bridget Carragher; Clinton S Potter
Journal:  J Struct Biol       Date:  2018-07-04       Impact factor: 2.867

Review 5.  AIPL1: A specialized chaperone for the phototransduction effector.

Authors:  Ravi P Yadav; Nikolai O Artemyev
Journal:  Cell Signal       Date:  2017-09-20       Impact factor: 4.315

6.  Discovery of New Inhibitors of eEF2K from Traditional Chinese Medicine Based on In Silico Screening and In Vitro Experimental Validation.

Authors:  Qinghua Fu; Xiaomei Liu; Yan Li; Peng Wang; Tian Wu; Haihan Xiao; Yameng Zhao; Qichao Liao; Ziyi Song
Journal:  Molecules       Date:  2022-07-30       Impact factor: 4.927

7.  Cryo-Electron Microscopy Structures of the Pneumoviridae Polymerases.

Authors:  Dongdong Cao; Bo Liang
Journal:  Viral Immunol       Date:  2020-05-19       Impact factor: 2.257

8.  Preparing Membrane Proteins for Simulation Using CHARMM-GUI.

Authors:  Yupeng Li; Jinchan Liu; James C Gumbart
Journal:  Methods Mol Biol       Date:  2021

9.  A 10-year meta-analysis of membrane protein structural biology: Detergents, membrane mimetics, and structure determination techniques.

Authors:  Brendon C Choy; Rosemary J Cater; Filippo Mancia; Edward E Pryor
Journal:  Biochim Biophys Acta Biomembr       Date:  2020-12-17       Impact factor: 3.747

Review 10.  Cryogenic Super-Resolution Fluorescence and Electron Microscopy Correlated at the Nanoscale.

Authors:  Peter D Dahlberg; W E Moerner
Journal:  Annu Rev Phys Chem       Date:  2021-01-13       Impact factor: 12.703

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.