Literature DB >> 26804563

Antibody-based affinity cryo-EM grid.

Guimei Yu1, Kunpeng Li1, Wen Jiang2.   

Abstract

The Affinity Grid technique combines sample purification and cryo-Electron Microscopy (cryo-EM) grid preparation into a single step. Several types of affinity surfaces, including functionalized lipids monolayers, streptavidin 2D crystals, and covalently functionalized carbon surfaces have been reported. More recently, we presented a new affinity cryo-EM approach, cryo-SPIEM, which applies the traditional Solid Phase Immune Electron Microscopy (SPIEM) technique to cryo-EM. This approach significantly simplifies the preparation of affinity grids and directly works with native macromolecular complexes without need of target modifications. With wide availability of high affinity and high specificity antibodies, the antibody-based affinity grid would enable cryo-EM studies of the native samples directly from cell cultures, targets of low abundance, and unstable or short-lived intermediate states.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  3D reconstruction; Affinity grid; Antibodies; Cryo-SPIEM; On-grid assays; Single particle cryo-EM

Mesh:

Substances:

Year:  2016        PMID: 26804563      PMCID: PMC4848123          DOI: 10.1016/j.ymeth.2016.01.010

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  34 in total

1.  Sensitive solid-phase immune electron microscopy double-antibody technique with gold-immunoglobulin G complexes for detecting rotavirus in cell culture and feces.

Authors:  B Wu; J B Mahony; G Simon; M A Chernesky
Journal:  J Clin Microbiol       Date:  1990-05       Impact factor: 5.948

2.  Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.

Authors:  Fei Guo; Zheng Liu; Ping-An Fang; Qinfen Zhang; Elena T Wright; Weimin Wu; Ci Zhang; Frank Vago; Yue Ren; Joanita Jakana; Wah Chiu; Philip Serwer; Wen Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

3.  Quantitative assay for plant viruses using serologically specific electron microscopy.

Authors:  K S Derrick
Journal:  Virology       Date:  1973-12       Impact factor: 3.616

4.  Solid-phase immune electron microscopy with human immunoglobulin M for serotyping of Norwalk-like viruses.

Authors:  D C Lewis; N F Lightfoot; J V Pether
Journal:  J Clin Microbiol       Date:  1988-05       Impact factor: 5.948

5.  Detection of rotavirus by serological trapping on antibody-coated electron microscope grids.

Authors:  A Nicolaieff; G Obert; M H van Regenmortel
Journal:  J Clin Microbiol       Date:  1980-07       Impact factor: 5.948

6.  Further studies on the use of protein A in immune electron microscopy for detecting virus particles.

Authors:  K H Gough; D D Shukla
Journal:  J Gen Virol       Date:  1980-12       Impact factor: 3.891

7.  Single-step antibody-based affinity cryo-electron microscopy for imaging and structural analysis of macromolecular assemblies.

Authors:  Guimei Yu; Frank Vago; Dongsheng Zhang; Jonathan E Snyder; Rui Yan; Ci Zhang; Christopher Benjamin; Xi Jiang; Richard J Kuhn; Philip Serwer; David H Thompson; Wen Jiang
Journal:  J Struct Biol       Date:  2014-04-26       Impact factor: 2.867

8.  Three serotypes of Norwalk-like virus demonstrated by solid-phase immune electron microscopy.

Authors:  D C Lewis
Journal:  J Med Virol       Date:  1990-01       Impact factor: 2.327

9.  Use of polylysine for adsorption of nuclei acids and enzymes to electron microscope specimen films.

Authors:  R C Williams
Journal:  Proc Natl Acad Sci U S A       Date:  1977-06       Impact factor: 11.205

10.  Controlling protein adsorption on graphene for cryo-EM using low-energy hydrogen plasmas.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Nat Methods       Date:  2014-04-20       Impact factor: 28.547

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  19 in total

Review 1.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

Review 2.  Atomic cryo-EM structures of viruses.

Authors:  Wen Jiang; Liang Tang
Journal:  Curr Opin Struct Biol       Date:  2017-08-05       Impact factor: 6.809

Review 3.  Biological Applications at the Cutting Edge of Cryo-Electron Microscopy.

Authors:  Rebecca S Dillard; Cheri M Hampton; Joshua D Strauss; Zunlong Ke; Deanna Altomara; Ricardo C Guerrero-Ferreira; Gabriella Kiss; Elizabeth R Wright
Journal:  Microsc Microanal       Date:  2018-08       Impact factor: 4.127

4.  Monolayer-crystal streptavidin support films provide an internal standard of cryo-EM image quality.

Authors:  Bong-Gyoon Han; Zoe Watson; Jamie H D Cate; Robert M Glaeser
Journal:  J Struct Biol       Date:  2017-03-01       Impact factor: 2.867

5.  Antibody-Based Affinity Cryoelectron Microscopy at 2.6-Å Resolution.

Authors:  Guimei Yu; Kunpeng Li; Pengwei Huang; Xi Jiang; Wen Jiang
Journal:  Structure       Date:  2016-11-01       Impact factor: 5.006

Review 6.  Cryo-EM: beyond the microscope.

Authors:  Lesley A Earl; Veronica Falconieri; Jacqueline Ls Milne; Sriram Subramaniam
Journal:  Curr Opin Struct Biol       Date:  2017-06-21       Impact factor: 6.809

7.  Formation of thyroid hormone revealed by a cryo-EM structure of native bovine thyroglobulin.

Authors:  Nils Marechal; Banyuhay P Serrano; Xinyan Zhang; Charles J Weitz
Journal:  Nat Commun       Date:  2022-05-02       Impact factor: 17.694

8.  PROTEINS, INTERFACES, AND CRYO-EM GRIDS.

Authors:  Robert M Glaeser
Journal:  Curr Opin Colloid Interface Sci       Date:  2017-12-22       Impact factor: 6.448

9.  Design of a molecular support for cryo-EM structure determination.

Authors:  Thomas G Martin; Tanmay A M Bharat; Andreas C Joerger; Xiao-Chen Bai; Florian Praetorius; Alan R Fersht; Hendrik Dietz; Sjors H W Scheres
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-07       Impact factor: 11.205

Review 10.  Understanding the invisible hands of sample preparation for cryo-EM.

Authors:  Giulia Weissenberger; Rene J M Henderikx; Peter J Peters
Journal:  Nat Methods       Date:  2021-05-07       Impact factor: 47.990

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