Literature DB >> 28787658

Atomic cryo-EM structures of viruses.

Wen Jiang1, Liang Tang2.   

Abstract

During the development of single particle cryo-EM in past five decades, icosahedral viruses have led the resolution progress owing to their large mass and high symmetry. Many technical advances in cryo-EM were first established with viruses. Since reaching ∼4Å resolution in 2008, it has become a relatively routine task to solve the atomic structure of isolated viruses. The future of structural virology will be increasingly focused on remaining challenges including solving structures of jumbo viruses, intermediate functional states during assembly, maturation, and infection, and in situ structures. Recent demonstrations of near-atomic resolution structure with electron tomography and sub-tomogram averaging opens a new direction for high resolution studies of pleomorphic viruses and the pleomorphic states of icosahedral viruses that have defied past efforts using the single particle cryo-EM approach.
Copyright © 2017 Elsevier Ltd. All rights reserved.

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Year:  2017        PMID: 28787658      PMCID: PMC5683926          DOI: 10.1016/j.sbi.2017.07.002

Source DB:  PubMed          Journal:  Curr Opin Struct Biol        ISSN: 0959-440X            Impact factor:   6.809


  73 in total

1.  Topologically linked protein rings in the bacteriophage HK97 capsid.

Authors:  W R Wikoff; L Liljas; R L Duda; H Tsuruta; R W Hendrix; J E Johnson
Journal:  Science       Date:  2000-09-22       Impact factor: 47.728

2.  A practical method to detect and correct for lens distortion in the TEM.

Authors:  Gian Carlo Capitani; Peter Oleynikov; Sven Hovmöller; Marcello Mellini
Journal:  Ultramicroscopy       Date:  2005-07-01       Impact factor: 2.689

3.  Structural analysis of viral nucleocapsids by subtraction of partial projections.

Authors:  Ying Zhang; Victor A Kostyuchenko; Michael G Rossmann
Journal:  J Struct Biol       Date:  2006-09-16       Impact factor: 2.867

4.  Virology. A virus that infects a hyperthermophile encapsidates A-form DNA.

Authors:  Frank DiMaio; Xiong Yu; Elena Rensen; Mart Krupovic; David Prangishvili; Edward H Egelman
Journal:  Science       Date:  2015-05-22       Impact factor: 47.728

5.  Capsid expansion mechanism of bacteriophage T7 revealed by multistate atomic models derived from cryo-EM reconstructions.

Authors:  Fei Guo; Zheng Liu; Ping-An Fang; Qinfen Zhang; Elena T Wright; Weimin Wu; Ci Zhang; Frank Vago; Yue Ren; Joanita Jakana; Wah Chiu; Philip Serwer; Wen Jiang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-10-13       Impact factor: 11.205

6.  Accurate model annotation of a near-atomic resolution cryo-EM map.

Authors:  Corey F Hryc; Dong-Hua Chen; Pavel V Afonine; Joanita Jakana; Zhao Wang; Cameron Haase-Pettingell; Wen Jiang; Paul D Adams; Jonathan A King; Michael F Schmid; Wah Chiu
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-07       Impact factor: 11.205

7.  Long-distance correlations of rhinovirus capsid dynamics contribute to uncoating and antiviral activity.

Authors:  Amitava Roy; Carol Beth Post
Journal:  Proc Natl Acad Sci U S A       Date:  2012-03-21       Impact factor: 11.205

8.  In vivo assembly of an archaeal virus studied with whole-cell electron cryotomography.

Authors:  Chi-Yu Fu; Kang Wang; Lu Gan; Jason Lanman; Reza Khayat; Mark J Young; Grant J Jensen; Peter C Doerschuk; John E Johnson
Journal:  Structure       Date:  2010-12-08       Impact factor: 5.006

9.  Antibody-based affinity cryo-EM grid.

Authors:  Guimei Yu; Kunpeng Li; Wen Jiang
Journal:  Methods       Date:  2016-01-21       Impact factor: 3.608

10.  In situ structures of the segmented genome and RNA polymerase complex inside a dsRNA virus.

Authors:  Xing Zhang; Ke Ding; Xuekui Yu; Winston Chang; Jingchen Sun; Z Hong Zhou
Journal:  Nature       Date:  2015-10-26       Impact factor: 49.962

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  16 in total

1.  What Could Go Wrong? A Practical Guide to Single-Particle Cryo-EM: From Biochemistry to Atomic Models.

Authors:  Michael A Cianfrocco; Elizabeth H Kellogg
Journal:  J Chem Inf Model       Date:  2020-03-09       Impact factor: 4.956

Review 2.  Cryo-electron microscopy for the study of virus assembly.

Authors:  Daniel Luque; José R Castón
Journal:  Nat Chem Biol       Date:  2020-02-20       Impact factor: 15.040

3.  A Histogram-based Outlier Profile for Atomic Structures Derived from Cryo-Electron Microscopy.

Authors:  Lin Chen; Jing He
Journal:  ACM BCB       Date:  2019-09

4.  Binding Networks Identify Targetable Protein Pockets for Mechanism-Based Drug Design.

Authors:  Mónika Bálint; Balázs Zoltán Zsidó; David van der Spoel; Csaba Hetényi
Journal:  Int J Mol Sci       Date:  2022-06-30       Impact factor: 6.208

5.  Development of CryoVR, a virtual reality training system for hands-on cryoEM operations.

Authors:  Jiahui Dong; Daoyi Li; Kadir Ozcan; Dayu Wan; Wen Jiang; Yingjie Chen
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-06-27       Impact factor: 5.699

6.  Image processing for cryogenic transmission electron microscopy of symmetry-mismatched complexes.

Authors:  Juha T Huiskonen
Journal:  Biosci Rep       Date:  2018-02-08       Impact factor: 3.840

7.  Pushing the resolution limit by correcting the Ewald sphere effect in single-particle Cryo-EM reconstructions.

Authors:  Dongjie Zhu; Xiangxi Wang; Qianglin Fang; James L Van Etten; Michael G Rossmann; Zihe Rao; Xinzheng Zhang
Journal:  Nat Commun       Date:  2018-04-19       Impact factor: 14.919

8.  Adenovirus flow in host cell networks.

Authors:  Justin W Flatt; Sarah J Butcher
Journal:  Open Biol       Date:  2019-02-28       Impact factor: 6.411

9.  Immunoelectron Microscopy of Viral Antigens.

Authors:  Neetu M Gulati; Udana Torian; John R Gallagher; Audray K Harris
Journal:  Curr Protoc Microbiol       Date:  2019-06

Review 10.  Breaking Symmetry in Viral Icosahedral Capsids as Seen through the Lenses of X-ray Crystallography and Cryo-Electron Microscopy.

Authors:  Kristin N Parent; Jason R Schrad; Gino Cingolani
Journal:  Viruses       Date:  2018-02-07       Impact factor: 5.048

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