Literature DB >> 33950393

From Tube to Structure: SPA Cryo-EM Workflow Using Apoferritin as an Example.

Christoph A Diebolder1, Rebecca S Dillard1, Ludovic Renault2.   

Abstract

In this chapter, we present an overview of a standard protocol to achieve structure determination at high resolution by Single Particle Analysis cryogenic Electron Microscopy using apoferritin as a standard sample. The purified apoferritin is applied to a glow-discharged support and then flash frozen in liquid ethane. The prepared grids are loaded into the electron microscope and checked for particle spreading and ice thickness. The microscope alignments are performed and the data collection session is setup for an overnight data collection. The collected movies containing two-dimensional images of the apoferritin sample are then processed to obtain a high-resolution three-dimensional reconstruction.

Entities:  

Keywords:  Cryo-EM; Cryogenic Electron Microscopy; Sample Preparation; Single Particle Analysis; Standard Protocol; Workflow

Year:  2021        PMID: 33950393     DOI: 10.1007/978-1-0716-1406-8_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  54 in total

Review 1.  Cryo-electron microscopy of vitrified specimens.

Authors:  J Dubochet; M Adrian; J J Chang; J C Homo; J Lepault; A W McDowall; P Schultz
Journal:  Q Rev Biophys       Date:  1988-05       Impact factor: 5.318

2.  Improved sample dispersion in cryo-EM using "perpetually-hydrated" graphene oxide flakes.

Authors:  Martin Cheung; Hidehito Adaniya; Cathal Cassidy; Masao Yamashita; Kun-Lung Li; Seita Taba; Tsumoru Shintake
Journal:  J Struct Biol       Date:  2018-07-18       Impact factor: 2.867

3.  Cryo-electron microscopy of viruses.

Authors:  M Adrian; J Dubochet; J Lepault; A W McDowall
Journal:  Nature       Date:  1984 Mar 1-7       Impact factor: 49.962

4.  The Affinity Grid: a pre-fabricated EM grid for monolayer purification.

Authors:  Deborah F Kelly; Priyanka D Abeyrathne; Danijela Dukovski; Thomas Walz
Journal:  J Mol Biol       Date:  2008-07-16       Impact factor: 5.469

5.  Graphene oxide: a substrate for optimizing preparations of frozen-hydrated samples.

Authors:  Radosav S Pantelic; Jannik C Meyer; Ute Kaiser; Wolfgang Baumeister; Jürgen M Plitzko
Journal:  J Struct Biol       Date:  2009-12-24       Impact factor: 2.867

Review 6.  How cryo-EM is revolutionizing structural biology.

Authors:  Xiao-chen Bai; Greg McMullan; Sjors H W Scheres
Journal:  Trends Biochem Sci       Date:  2014-11-07       Impact factor: 13.807

7.  Multifunctional graphene supports for electron cryomicroscopy.

Authors:  Katerina Naydenova; Mathew J Peet; Christopher J Russo
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-24       Impact factor: 11.205

Review 8.  Unravelling biological macromolecules with cryo-electron microscopy.

Authors:  Rafael Fernandez-Leiro; Sjors H W Scheres
Journal:  Nature       Date:  2016-09-15       Impact factor: 49.962

9.  Electron microscopy: Ultrastable gold substrates for electron cryomicroscopy.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Science       Date:  2014-12-12       Impact factor: 47.728

10.  Controlling protein adsorption on graphene for cryo-EM using low-energy hydrogen plasmas.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Nat Methods       Date:  2014-04-20       Impact factor: 28.547

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  1 in total

1.  UVC inactivation of pathogenic samples suitable for cryo-EM analysis.

Authors:  Jamie S Depelteau; Ludovic Renault; Nynke Althof; C Keith Cassidy; Luiza M Mendonça; Grant J Jensen; Guenter P Resch; Ariane Briegel
Journal:  Commun Biol       Date:  2022-01-11
  1 in total

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