Literature DB >> 27662673

Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Leyuan Fang, Shutao Li, David Cunefare, Sina Farsiu.   

Abstract

We demonstrate the usefulness of utilizing a segmentation step for improving the performance of sparsity based image reconstruction algorithms. In specific, we will focus on retinal optical coherence tomography (OCT) reconstruction and propose a novel segmentation based reconstruction framework with sparse representation, termed segmentation based sparse reconstruction (SSR). The SSR method uses automatically segmented retinal layer information to construct layer-specific structural dictionaries. In addition, the SSR method efficiently exploits patch similarities within each segmented layer to enhance the reconstruction performance. Our experimental results on clinical-grade retinal OCT images demonstrate the effectiveness and efficiency of the proposed SSR method for both denoising and interpolation of OCT images.

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Year:  2016        PMID: 27662673      PMCID: PMC5363080          DOI: 10.1109/TMI.2016.2611503

Source DB:  PubMed          Journal:  IEEE Trans Med Imaging        ISSN: 0278-0062            Impact factor:   10.048


  51 in total

1.  Quantitative classification of eyes with and without intermediate age-related macular degeneration using optical coherence tomography.

Authors:  Sina Farsiu; Stephanie J Chiu; Rachelle V O'Connell; Francisco A Folgar; Eric Yuan; Joseph A Izatt; Cynthia A Toth
Journal:  Ophthalmology       Date:  2013-08-29       Impact factor: 12.079

2.  Image denoising via sparse and redundant representations over learned dictionaries.

Authors:  Michael Elad; Michal Aharon
Journal:  IEEE Trans Image Process       Date:  2006-12       Impact factor: 10.856

3.  Comparison of PDE-based nonlinear diffusion approaches for image enhancement and denoising in optical coherence tomography.

Authors:  Harry M Salinas; Delia Cabrera Fernández
Journal:  IEEE Trans Med Imaging       Date:  2007-06       Impact factor: 10.048

4.  A pyramid approach to subpixel registration based on intensity.

Authors:  P Thévenaz; U E Ruttimann; M Unser
Journal:  IEEE Trans Image Process       Date:  1998       Impact factor: 10.856

5.  Generalizing the nonlocal-means to super-resolution reconstruction.

Authors:  Matan Protter; Michael Elad; Hiroyuki Takeda; Peyman Milanfar
Journal:  IEEE Trans Image Process       Date:  2009-01       Impact factor: 10.856

6.  Quantitative evaluation of transform domains for compressive sampling-based recovery of sparsely sampled volumetric OCT images.

Authors:  Andy Bo Wu; Evgeniy Lebed; Marinko V Sarunic; Mirza Faisal Beg
Journal:  IEEE Trans Biomed Eng       Date:  2012-05-15       Impact factor: 4.538

7.  Wavelet-domain medical image denoising using bivariate laplacian mixture model.

Authors:  Hossein Rabbani; Reza Nezafat; Saeed Gazor
Journal:  IEEE Trans Biomed Eng       Date:  2009-08-18       Impact factor: 4.538

8.  Sparse reconstruction of breast MRI using homotopic L0 minimization in a regional sparsified domain.

Authors:  Alexander Wong; Akshaya Mishra; Paul Fieguth; David A Clausi
Journal:  IEEE Trans Biomed Eng       Date:  2013-03       Impact factor: 4.538

9.  Three-dimensional segmentation of fluid-associated abnormalities in retinal OCT: probability constrained graph-search-graph-cut.

Authors:  Xinjian Chen; Meindert Niemeijer; Li Zhang; Kyungmoo Lee; Michael D Abramoff; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2012-03-19       Impact factor: 10.048

10.  Low-dose X-ray CT reconstruction via dictionary learning.

Authors:  Qiong Xu; Hengyong Yu; Xuanqin Mou; Lei Zhang; Jiang Hsieh; Ge Wang
Journal:  IEEE Trans Med Imaging       Date:  2012-04-20       Impact factor: 10.048

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  18 in total

1.  Automatic detection of the foveal center in optical coherence tomography.

Authors:  Bart Liefers; Freerk G Venhuizen; Vivian Schreur; Bram van Ginneken; Carel Hoyng; Sascha Fauser; Thomas Theelen; Clara I Sánchez
Journal:  Biomed Opt Express       Date:  2017-10-23       Impact factor: 3.732

2.  Retinal optical coherence tomography image enhancement via deep learning.

Authors:  Kerry J Halupka; Bhavna J Antony; Matthew H Lee; Katie A Lucy; Ravneet S Rai; Hiroshi Ishikawa; Gadi Wollstein; Joel S Schuman; Rahil Garnavi
Journal:  Biomed Opt Express       Date:  2018-11-13       Impact factor: 3.732

3.  Speckle noise reduction in optical coherence tomography images based on edge-sensitive cGAN.

Authors:  Yuhui Ma; Xinjian Chen; Weifang Zhu; Xuena Cheng; Dehui Xiang; Fei Shi
Journal:  Biomed Opt Express       Date:  2018-10-02       Impact factor: 3.732

4.  Volumetric non-local-means based speckle reduction for optical coherence tomography.

Authors:  Carlos Cuartas-Vélez; René Restrepo; Brett E Bouma; Néstor Uribe-Patarroyo
Journal:  Biomed Opt Express       Date:  2018-06-26       Impact factor: 3.732

5.  Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search.

Authors:  Leyuan Fang; David Cunefare; Chong Wang; Robyn H Guymer; Shutao Li; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2017-04-27       Impact factor: 3.732

6.  Dual-stage deep learning framework for pigment epithelium detachment segmentation in polypoidal choroidal vasculopathy.

Authors:  Yupeng Xu; Ke Yan; Jinman Kim; Xiuying Wang; Changyang Li; Li Su; Suqin Yu; Xun Xu; Dagan David Feng
Journal:  Biomed Opt Express       Date:  2017-08-10       Impact factor: 3.732

7.  Statistical model for OCT image denoising.

Authors:  Muxingzi Li; Ramzi Idoughi; Biswarup Choudhury; Wolfgang Heidrich
Journal:  Biomed Opt Express       Date:  2017-08-01       Impact factor: 3.732

8.  Frequency-constrained robust principal component analysis: a sparse representation approach to segmentation of dynamic features in optical coherence tomography imaging.

Authors:  James P McLean; Yuye Ling; Christine P Hendon
Journal:  Opt Express       Date:  2017-10-16       Impact factor: 3.894

9.  Shared-hole graph search with adaptive constraints for 3D optic nerve head optical coherence tomography image segmentation.

Authors:  Kai Yu; Fei Shi; Enting Gao; Weifang Zhu; Haoyu Chen; Xinjian Chen
Journal:  Biomed Opt Express       Date:  2018-02-02       Impact factor: 3.732

10.  3D Shape Modeling and Analysis of Retinal Microvasculature in OCT-Angiography Images.

Authors:  Jiong Zhang; Yuchuan Qiao; Mona Sharifi Sarabi; Maziyar M Khansari; Jin K Gahm; Amir H Kashani; Yonggang Shi
Journal:  IEEE Trans Med Imaging       Date:  2019-10-22       Impact factor: 10.048

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