Literature DB >> 31065423

Retinal optical coherence tomography image enhancement via deep learning.

Kerry J Halupka1, Bhavna J Antony1, Matthew H Lee1, Katie A Lucy2, Ravneet S Rai2, Hiroshi Ishikawa2, Gadi Wollstein2, Joel S Schuman2, Rahil Garnavi1.   

Abstract

Optical coherence tomography (OCT) images of the retina are a powerful tool for diagnosing and monitoring eye disease. However, they are plagued by speckle noise, which reduces image quality and reliability of assessment. This paper introduces a novel speckle reduction method inspired by the recent successes of deep learning in medical imaging. We present two versions of the network to reflect the needs and preferences of different end-users. Specifically, we train a convolution neural network to denoise cross-sections from OCT volumes of healthy eyes using either (1) mean-squared error, or (2) a generative adversarial network (GAN) with Wasserstein distance and perceptual similarity. We then interrogate the success of both methods with extensive quantitative and qualitative metrics on cross-sections from both healthy and glaucomatous eyes. The results show that the former approach provides state-of-the-art improvement in quantitative metrics such as PSNR and SSIM, and aids layer segmentation. However, the latter approach, which puts more weight on visual perception, outperformed for qualitative comparisons based on accuracy, clarity, and personal preference. Overall, our results demonstrate the effectiveness and efficiency of a deep learning approach to denoising OCT images, while maintaining subtle details in the images.

Entities:  

Year:  2018        PMID: 31065423      PMCID: PMC6490980          DOI: 10.1364/BOE.9.006205

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  26 in total

1.  The retinal nerve fiber layer thickness in ocular hypertensive, normal, and glaucomatous eyes with optical coherence tomography.

Authors:  C Bowd; R N Weinreb; J M Williams; L M Zangwill
Journal:  Arch Ophthalmol       Date:  2000-01

2.  Optimal surface segmentation in volumetric images--a graph-theoretic approach.

Authors:  Kang Li; Xiaodong Wu; Danny Z Chen; Milan Sonka
Journal:  IEEE Trans Pattern Anal Mach Intell       Date:  2006-01       Impact factor: 6.226

3.  Image denoising by sparse 3-D transform-domain collaborative filtering.

Authors:  Kostadin Dabov; Alessandro Foi; Vladimir Katkovnik; Karen Egiazarian
Journal:  IEEE Trans Image Process       Date:  2007-08       Impact factor: 10.856

4.  Speckle reduction in optical coherence tomography images using digital filtering.

Authors:  Aydogan Ozcan; Alberto Bilenca; Adrien E Desjardins; Brett E Bouma; Guillermo J Tearney
Journal:  J Opt Soc Am A Opt Image Sci Vis       Date:  2007-07       Impact factor: 2.129

5.  Speckle attenuation in optical coherence tomography by curvelet shrinkage.

Authors:  Zhongping Jian; Zhaoxia Yu; Lingfeng Yu; Bin Rao; Zhongping Chen; Bruce J Tromberg
Journal:  Opt Lett       Date:  2009-05-15       Impact factor: 3.776

6.  Enhancing the signal-to-noise ratio in ophthalmic optical coherence tomography by image registration--method and clinical examples.

Authors:  Thomas Martini Jørgensen; Jakob Thomadsen; Ulrik Christensen; Wael Soliman; Birgit Sander
Journal:  J Biomed Opt       Date:  2007 Jul-Aug       Impact factor: 3.170

7.  Evaluation of retinal nerve fiber layer, optic nerve head, and macular thickness measurements for glaucoma detection using optical coherence tomography.

Authors:  Felipe A Medeiros; Linda M Zangwill; Christopher Bowd; Roberto M Vessani; Remo Susanna; Robert N Weinreb
Journal:  Am J Ophthalmol       Date:  2005-01       Impact factor: 5.258

8.  High-definition and 3-dimensional imaging of macular pathologies with high-speed ultrahigh-resolution optical coherence tomography.

Authors:  Vivek J Srinivasan; Maciej Wojtkowski; Andre J Witkin; Jay S Duker; Tony H Ko; Mariana Carvalho; Joel S Schuman; Andrzej Kowalczyk; James G Fujimoto
Journal:  Ophthalmology       Date:  2006-11       Impact factor: 12.079

9.  Automated 3-D intraretinal layer segmentation of macular spectral-domain optical coherence tomography images.

Authors:  Mona Kathryn Garvin; Michael David Abràmoff; Xiaodong Wu; Stephen R Russell; Trudy L Burns; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2009-03-10       Impact factor: 10.048

10.  Photoreceptor layer thinning over drusen in eyes with age-related macular degeneration imaged in vivo with spectral-domain optical coherence tomography.

Authors:  Stefanie G Schuman; Anjum F Koreishi; Sina Farsiu; Sin-ho Jung; Joseph A Izatt; Cynthia A Toth
Journal:  Ophthalmology       Date:  2009-01-22       Impact factor: 12.079

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  13 in total

1.  Towards label-free 3D segmentation of optical coherence tomography images of the optic nerve head using deep learning.

Authors:  Sripad Krishna Devalla; Tan Hung Pham; Satish Kumar Panda; Liang Zhang; Giridhar Subramanian; Anirudh Swaminathan; Chin Zhi Yun; Mohan Rajan; Sujatha Mohan; Ramaswami Krishnadas; Vijayalakshmi Senthil; John Mark S De Leon; Tin A Tun; Ching-Yu Cheng; Leopold Schmetterer; Shamira Perera; Tin Aung; Alexandre H Thiéry; Michaël J A Girard
Journal:  Biomed Opt Express       Date:  2020-10-15       Impact factor: 3.732

2.  Deep learning based noise reduction method for automatic 3D segmentation of the anterior of lamina cribrosa in optical coherence tomography volumetric scans.

Authors:  Zaixing Mao; Atsuya Miki; Song Mei; Ying Dong; Kazuichi Maruyama; Ryo Kawasaki; Shinichi Usui; Kenji Matsushita; Kohji Nishida; Kinpui Chan
Journal:  Biomed Opt Express       Date:  2019-10-21       Impact factor: 3.732

3.  Real-time OCT image denoising using a self-fusion neural network.

Authors:  Jose J Rico-Jimenez; Dewei Hu; Eric M Tang; Ipek Oguz; Yuankai K Tao
Journal:  Biomed Opt Express       Date:  2022-02-14       Impact factor: 3.732

4.  Self-fusion for OCT noise reduction.

Authors:  Ipek Oguz; Joseph D Malone; Yigit Atay; Yuankai K Tao
Journal:  Proc SPIE Int Soc Opt Eng       Date:  2020-03-10

5.  A Joint Model for Macular Edema Analysis in Optical Coherence Tomography Images Based on Image Enhancement and Segmentation.

Authors:  Zhifu Tao; Wenping Zhang; Mudi Yao; Yuanfu Zhong; Yanan Sun; Xiu-Miao Li; Jin Yao; Qin Jiang; Peirong Lu; Zhenhua Wang
Journal:  Biomed Res Int       Date:  2021-02-17       Impact factor: 3.411

6.  Personalized Atrophy Risk Mapping in Age-Related Macular Degeneration.

Authors:  Anthony Gigon; Agata Mosinska; Andrea Montesel; Yasmine Derradji; Stefanos Apostolopoulos; Carlos Ciller; Sandro De Zanet; Irmela Mantel
Journal:  Transl Vis Sci Technol       Date:  2021-11-01       Impact factor: 3.283

7.  Diagnostic Performance of Deep Learning Classifiers in Measuring Peripheral Anterior Synechia Based on Swept Source Optical Coherence Tomography Images.

Authors:  Yangfan Yang; Yanyan Wu; Chong Guo; Ying Han; Mingjie Deng; Haotian Lin; Minbin Yu
Journal:  Front Med (Lausanne)       Date:  2022-01-26

Review 8.  Optical Coherence Tomography and Glaucoma.

Authors:  Alexi Geevarghese; Gadi Wollstein; Hiroshi Ishikawa; Joel S Schuman
Journal:  Annu Rev Vis Sci       Date:  2021-07-09       Impact factor: 7.745

9.  Enhanced Visualization of Retinal Microvasculature in Optical Coherence Tomography Angiography Imaging via Deep Learning.

Authors:  Shin Kadomoto; Akihito Uji; Yuki Muraoka; Tadamichi Akagi; Akitaka Tsujikawa
Journal:  J Clin Med       Date:  2020-05-02       Impact factor: 4.241

Review 10.  Application of generative adversarial networks (GAN) for ophthalmology image domains: a survey.

Authors:  Aram You; Jin Kuk Kim; Ik Hee Ryu; Tae Keun Yoo
Journal:  Eye Vis (Lond)       Date:  2022-02-02
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