Literature DB >> 29984102

Volumetric non-local-means based speckle reduction for optical coherence tomography.

Carlos Cuartas-Vélez1, René Restrepo1, Brett E Bouma2,3, Néstor Uribe-Patarroyo2.   

Abstract

We present a novel tomographic non-local-means based despeckling technique, TNode, for optical coherence tomography. TNode is built upon a weighting similarity criterion derived for speckle in a three-dimensional similarity window. We present an implementation using a two-dimensional search window, enabling the despeckling of volumes in the presence of motion artifacts, and an implementation using a three-dimensional window with improved performance in motion-free volumes. We show that our technique provides effective speckle reduction, comparable with B-scan compounding or out-of-plane averaging, while preserving isotropic resolution, even to the level of speckle-sized structures. We demonstrate its superior despeckling performance in a phantom data set, and in an ophthalmic data set we show that small, speckle-sized retinal vessels are clearly preserved in intensity images en-face and in two orthogonal, cross-sectional views. TNode does not rely on dictionaries or segmentation and therefore can readily be applied to arbitrary optical coherence tomography volumes. We show that despeckled esophageal volumes exhibit improved image quality and detail, even in the presence of significant motion artifacts.

Keywords:  (100.0100) Image processing; (100.6950) Tomographic image processing; (110.4280) Noise in imaging systems; (110.4500) Optical coherence tomography; (170.3880) Medical and biological imaging

Year:  2018        PMID: 29984102      PMCID: PMC6033569          DOI: 10.1364/BOE.9.003354

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  44 in total

1.  Speckle reduction in optical coherence tomography by frequency compounding.

Authors:  Michael Pircher; Erich Gotzinger; Rainer Leitgeb; Adolf F Fercher; Christoph K Hitzenberger
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2.  General Bayesian estimation for speckle noise reduction in optical coherence tomography retinal imagery.

Authors:  Alexander Wong; Akshaya Mishra; Kostadinka Bizheva; David A Clausi
Journal:  Opt Express       Date:  2010-04-12       Impact factor: 3.894

3.  Speckle reduction in optical coherence tomography images by use of a spatially adaptive wavelet filter.

Authors:  Desmond C Adler; Tony H Ko; James G Fujimoto
Journal:  Opt Lett       Date:  2004-12-15       Impact factor: 3.776

4.  Extracting three-dimensional orientation and tractography of myofibers using optical coherence tomography.

Authors:  Yu Gan; Christine P Fleming
Journal:  Biomed Opt Express       Date:  2013-09-13       Impact factor: 3.732

5.  Quantification of fiber orientation in the canine atrial pacemaker complex using optical coherence tomography.

Authors:  Christina M Ambrosi; Vadim V Fedorov; Richard B Schuessler; Andrew M Rollins; Igor R Efimov
Journal:  J Biomed Opt       Date:  2012-07       Impact factor: 3.170

6.  Speckle in optical coherence tomography.

Authors:  J M Schmitt; S H Xiang; K M Yung
Journal:  J Biomed Opt       Date:  1999-01       Impact factor: 3.170

7.  Birefringence microscopy platform for assessing airway smooth muscle structure and function in vivo.

Authors:  David C Adams; Lida P Hariri; Alyssa J Miller; Yan Wang; Josalyn L Cho; Martin Villiger; Jasmin A Holz; Margit V Szabari; Daniel L Hamilos; R Scott Harris; Jason W Griffith; Brett E Bouma; Andrew D Luster; Benjamin D Medoff; Melissa J Suter
Journal:  Sci Transl Med       Date:  2016-10-05       Impact factor: 17.956

8.  Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Authors:  Leyuan Fang; Shutao Li; David Cunefare; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2016-09-20       Impact factor: 10.048

9.  Longitudinal, 3D Imaging of Collagen Remodeling in Murine Hypertrophic Scars In Vivo Using Polarization-Sensitive Optical Frequency Domain Imaging.

Authors:  William C Y Lo; Martin Villiger; Alexander Golberg; G Felix Broelsch; Saiqa Khan; Christine G Lian; William G Austen; Martin Yarmush; Brett E Bouma
Journal:  J Invest Dermatol       Date:  2016-01       Impact factor: 8.551

10.  Coronary Plaque Microstructure and Composition Modify Optical Polarization: A New Endogenous Contrast Mechanism for Optical Frequency Domain Imaging.

Authors:  Martin Villiger; Kenichiro Otsuka; Antonios Karanasos; Pallavi Doradla; Jian Ren; Norman Lippok; Milen Shishkov; Joost Daemen; Roberto Diletti; Robert-Jan van Geuns; Felix Zijlstra; Gijs van Soest; Peter Libby; Evelyn Regar; Seemantini K Nadkarni; Brett E Bouma
Journal:  JACC Cardiovasc Imaging       Date:  2017-12-13
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  6 in total

1.  High-speed collagen fiber modeling and orientation quantification for optical coherence tomography imaging.

Authors:  James P McLean; Yu Gan; Theresa H Lye; Dovina Qu; Helen H Lu; Christine P Hendon
Journal:  Opt Express       Date:  2019-05-13       Impact factor: 3.894

2.  Aperture phase modulation with adaptive optics: a novel approach for speckle reduction and structure extraction in optical coherence tomography.

Authors:  Pengfei Zhang; Suman K Manna; Eric B Miller; Yifan Jian; Ratheesh K Meleppat; Marinko V Sarunic; Edward N Pugh; Robert J Zawadzki
Journal:  Biomed Opt Express       Date:  2019-01-15       Impact factor: 3.732

3.  Layer-based, depth-resolved computation of attenuation coefficients and backscattering fractions in tissue using optical coherence tomography.

Authors:  Taylor M Cannon; Brett E Bouma; Néstor Uribe-Patarroyo
Journal:  Biomed Opt Express       Date:  2021-07-20       Impact factor: 3.562

4.  Corneal imaging with blue-light optical coherence microscopy.

Authors:  Shanjida Khan; Kai Neuhaus; Omkar Thaware; Shuibin Ni; Myeong Jin Ju; Travis Redd; David Huang; Yifan Jian
Journal:  Biomed Opt Express       Date:  2022-08-30       Impact factor: 3.562

5.  Speckle reduction in visible-light optical coherence tomography using scan modulation.

Authors:  Ian Rubinoff; Lisa Beckmann; Yuanbo Wang; Amani A Fawzi; Xiaorong Liu; Jenna Tauber; Katie Jones; Hiroshi Ishikawa; Joel S Schuman; Roman Kuranov; Hao F Zhang
Journal:  Neurophotonics       Date:  2019-09-03       Impact factor: 3.593

6.  Optical density based quantification of total haemoglobin concentrations with spectroscopic optical coherence tomography.

Authors:  Carlos Cuartas-Vélez; Colin Veenstra; Saskia Kruitwagen; Wilma Petersen; Nienke Bosschaart
Journal:  Sci Rep       Date:  2021-04-21       Impact factor: 4.379

  6 in total

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