Literature DB >> 29041245

Frequency-constrained robust principal component analysis: a sparse representation approach to segmentation of dynamic features in optical coherence tomography imaging.

James P McLean, Yuye Ling, Christine P Hendon.   

Abstract

Sparse representation theory is an exciting area of research with recent applications in medical imaging and detection, segmentation, and quantitative analysis of biological processes. We present a variant on the robust-principal component analysis (RPCA) algorithm, called frequency constrained RPCA (FC-RPCA), for selectively segmenting dynamic phenomena that exhibit spectra within a user-defined range of frequencies. The algorithm lacks subjective parameter tuning and demonstrates robust segmentation in datasets containing multiple motion sources and high amplitude noise. When tested on 17 ex-vivo, time lapse optical coherence tomography (OCT) B-scans of human ciliated epithelium, segmentation accuracies ranged between 91-99% and consistently out-performed traditional RPCA.

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Year:  2017        PMID: 29041245      PMCID: PMC5644470          DOI: 10.1364/OE.25.025819

Source DB:  PubMed          Journal:  Opt Express        ISSN: 1094-4087            Impact factor:   3.894


  24 in total

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Journal:  Ultrasound Med Biol       Date:  2003-07       Impact factor: 2.998

2.  Efficient subpixel image registration algorithms.

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4.  Signal competition in optical coherence tomography and its relevance for cochlear vibrometry.

Authors:  Nathan C Lin; Christine P Hendon; Elizabeth S Olson
Journal:  J Acoust Soc Am       Date:  2017-01       Impact factor: 1.840

5.  Myocardial imaging using ultrahigh-resolution spectral domain optical coherence tomography.

Authors:  Xinwen Yao; Yu Gan; Charles C Marboe; Christine P Hendon
Journal:  J Biomed Opt       Date:  2016-06       Impact factor: 3.170

6.  Ex vivo visualization of human ciliated epithelium and quantitative analysis of induced flow dynamics by using optical coherence tomography.

Authors:  Yuye Ling; Xinwen Yao; Ute A Gamm; Emilio Arteaga-Solis; Charles W Emala; Michael A Choma; Christine P Hendon
Journal:  Lasers Surg Med       Date:  2017-02-23       Impact factor: 4.025

7.  Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Authors:  Leyuan Fang; Shutao Li; David Cunefare; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2016-09-20       Impact factor: 10.048

8.  Monitoring airway mucus flow and ciliary activity with optical coherence tomography.

Authors:  Amy L Oldenburg; Raghav K Chhetri; David B Hill; Brian Button
Journal:  Biomed Opt Express       Date:  2012-08-01       Impact factor: 3.732

9.  In vivo micro-scale tomography of ciliary behavior in the mammalian oviduct.

Authors:  Shang Wang; Jason C Burton; Richard R Behringer; Irina V Larina
Journal:  Sci Rep       Date:  2015-08-17       Impact factor: 4.379

10.  Robust single-particle tracking in live-cell time-lapse sequences.

Authors:  Khuloud Jaqaman; Dinah Loerke; Marcel Mettlen; Hirotaka Kuwata; Sergio Grinstein; Sandra L Schmid; Gaudenz Danuser
Journal:  Nat Methods       Date:  2008-07-20       Impact factor: 28.547

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  2 in total

1.  Dynamic volumetric imaging and cilia beat mapping in the mouse male reproductive tract with optical coherence tomography.

Authors:  Kohei Umezu; Tian Xia; Irina V Larina
Journal:  Biomed Opt Express       Date:  2022-06-01       Impact factor: 3.562

2.  Noise reduction by adaptive-SIN filtering for retinal OCT images.

Authors:  Yan Hu; Jianfeng Ren; Jianlong Yang; Ruibing Bai; Jiang Liu
Journal:  Sci Rep       Date:  2021-09-30       Impact factor: 4.379

  2 in total

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