Literature DB >> 28663902

Automatic segmentation of nine retinal layer boundaries in OCT images of non-exudative AMD patients using deep learning and graph search.

Leyuan Fang1,2, David Cunefare1, Chong Wang2, Robyn H Guymer3, Shutao Li2, Sina Farsiu1,4.   

Abstract

We present a novel framework combining convolutional neural networks (CNN) and graph search methods (termed as CNN-GS) for the automatic segmentation of nine layer boundaries on retinal optical coherence tomography (OCT) images. CNN-GS first utilizes a CNN to extract features of specific retinal layer boundaries and train a corresponding classifier to delineate a pilot estimate of the eight layers. Next, a graph search method uses the probability maps created from the CNN to find the final boundaries. We validated our proposed method on 60 volumes (2915 B-scans) from 20 human eyes with non-exudative age-related macular degeneration (AMD), which attested to effectiveness of our proposed technique.

Entities:  

Keywords:  (100.0100) Image processing; (100.2960) Image analysis; (110.4500) Optical coherence tomography

Year:  2017        PMID: 28663902      PMCID: PMC5480509          DOI: 10.1364/BOE.8.002732

Source DB:  PubMed          Journal:  Biomed Opt Express        ISSN: 2156-7085            Impact factor:   3.732


  48 in total

1.  Retinal thickness measurements from optical coherence tomography using a Markov boundary model.

Authors:  D Koozekanani; K Boyer; C Roberts
Journal:  IEEE Trans Med Imaging       Date:  2001-09       Impact factor: 10.048

2.  Revealing Henle's fiber layer using spectral domain optical coherence tomography.

Authors:  Brandon J Lujan; Austin Roorda; Robert W Knighton; Joseph Carroll
Journal:  Invest Ophthalmol Vis Sci       Date:  2011-03-18       Impact factor: 4.799

3.  Quantitative classification of eyes with and without intermediate age-related macular degeneration using optical coherence tomography.

Authors:  Sina Farsiu; Stephanie J Chiu; Rachelle V O'Connell; Francisco A Folgar; Eric Yuan; Joseph A Izatt; Cynthia A Toth
Journal:  Ophthalmology       Date:  2013-08-29       Impact factor: 12.079

4.  Multi-surface segmentation of OCT images with AMD using sparse high order potentials.

Authors:  Jorge Oliveira; Sérgio Pereira; Luís Gonçalves; Manuel Ferreira; Carlos A Silva
Journal:  Biomed Opt Express       Date:  2016-12-16       Impact factor: 3.732

5.  Automated geographic atrophy segmentation for SD-OCT images using region-based C-V model via local similarity factor.

Authors:  Sijie Niu; Luis de Sisternes; Qiang Chen; Theodore Leng; Daniel L Rubin
Journal:  Biomed Opt Express       Date:  2016-01-20       Impact factor: 3.732

6.  Three-dimensional segmentation of fluid-associated abnormalities in retinal OCT: probability constrained graph-search-graph-cut.

Authors:  Xinjian Chen; Meindert Niemeijer; Li Zhang; Kyungmoo Lee; Michael D Abramoff; Milan Sonka
Journal:  IEEE Trans Med Imaging       Date:  2012-03-19       Impact factor: 10.048

7.  Segmentation Based Sparse Reconstruction of Optical Coherence Tomography Images.

Authors:  Leyuan Fang; Shutao Li; David Cunefare; Sina Farsiu
Journal:  IEEE Trans Med Imaging       Date:  2016-09-20       Impact factor: 10.048

8.  Evaluation of optical coherence tomography retinal thickness parameters for use in clinical trials for neovascular age-related macular degeneration.

Authors:  Pearse A Keane; Sandra Liakopoulos; Renu V Jivrajka; Karen T Chang; Tarek Alasil; Alexander C Walsh; Srinivas R Sadda
Journal:  Invest Ophthalmol Vis Sci       Date:  2009-03-05       Impact factor: 4.799

9.  Automatic segmentation of seven retinal layers in SDOCT images congruent with expert manual segmentation.

Authors:  Stephanie J Chiu; Xiao T Li; Peter Nicholas; Cynthia A Toth; Joseph A Izatt; Sina Farsiu
Journal:  Opt Express       Date:  2010-08-30       Impact factor: 3.894

10.  Automatic segmentation of closed-contour features in ophthalmic images using graph theory and dynamic programming.

Authors:  Stephanie J Chiu; Cynthia A Toth; Catherine Bowes Rickman; Joseph A Izatt; Sina Farsiu
Journal:  Biomed Opt Express       Date:  2012-04-26       Impact factor: 3.732

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  117 in total

1.  ELHnet: a convolutional neural network for classifying cochlear endolymphatic hydrops imaged with optical coherence tomography.

Authors:  George S Liu; Michael H Zhu; Jinkyung Kim; Patrick Raphael; Brian E Applegate; John S Oghalai
Journal:  Biomed Opt Express       Date:  2017-09-20       Impact factor: 3.732

2.  Automatic detection of the foveal center in optical coherence tomography.

Authors:  Bart Liefers; Freerk G Venhuizen; Vivian Schreur; Bram van Ginneken; Carel Hoyng; Sascha Fauser; Thomas Theelen; Clara I Sánchez
Journal:  Biomed Opt Express       Date:  2017-10-23       Impact factor: 3.732

3.  Automated segmentation of peripapillary retinal boundaries in OCT combining a convolutional neural network and a multi-weights graph search.

Authors:  Pengxiao Zang; Jie Wang; Tristan T Hormel; Liang Liu; David Huang; Yali Jia
Journal:  Biomed Opt Express       Date:  2019-08-01       Impact factor: 3.732

4.  Accuracy of ultrawide-field fundus ophthalmoscopy-assisted deep learning for detecting treatment-naïve proliferative diabetic retinopathy.

Authors:  Toshihiko Nagasawa; Hitoshi Tabuchi; Hiroki Masumoto; Hiroki Enno; Masanori Niki; Zaigen Ohara; Yuki Yoshizumi; Hideharu Ohsugi; Yoshinori Mitamura
Journal:  Int Ophthalmol       Date:  2019-02-23       Impact factor: 2.031

5.  Development and validation of a deep learning algorithm for distinguishing the nonperfusion area from signal reduction artifacts on OCT angiography.

Authors:  Yukun Guo; Tristan T Hormel; Honglian Xiong; Bingjie Wang; Acner Camino; Jie Wang; David Huang; Thomas S Hwang; Yali Jia
Journal:  Biomed Opt Express       Date:  2019-06-12       Impact factor: 3.732

6.  Robust deep learning method for choroidal vessel segmentation on swept source optical coherence tomography images.

Authors:  Xiaoxiao Liu; Lei Bi; Yupeng Xu; Dagan Feng; Jinman Kim; Xun Xu
Journal:  Biomed Opt Express       Date:  2019-03-05       Impact factor: 3.732

7.  Active contour method for ILM segmentation in ONH volume scans in retinal OCT.

Authors:  Kay Gawlik; Frank Hausser; Friedemann Paul; Alexander U Brandt; Ella Maria Kadas
Journal:  Biomed Opt Express       Date:  2018-11-28       Impact factor: 3.732

8.  Towards label-free 3D segmentation of optical coherence tomography images of the optic nerve head using deep learning.

Authors:  Sripad Krishna Devalla; Tan Hung Pham; Satish Kumar Panda; Liang Zhang; Giridhar Subramanian; Anirudh Swaminathan; Chin Zhi Yun; Mohan Rajan; Sujatha Mohan; Ramaswami Krishnadas; Vijayalakshmi Senthil; John Mark S De Leon; Tin A Tun; Ching-Yu Cheng; Leopold Schmetterer; Shamira Perera; Tin Aung; Alexandre H Thiéry; Michaël J A Girard
Journal:  Biomed Opt Express       Date:  2020-10-15       Impact factor: 3.732

9.  Robust total retina thickness segmentation in optical coherence tomography images using convolutional neural networks.

Authors:  Freerk G Venhuizen; Bram van Ginneken; Bart Liefers; Mark J J P van Grinsven; Sascha Fauser; Carel Hoyng; Thomas Theelen; Clara I Sánchez
Journal:  Biomed Opt Express       Date:  2017-06-16       Impact factor: 3.732

10.  Multilayered Deep Structure Tensor Delaunay Triangulation and Morphing Based Automated Diagnosis and 3D Presentation of Human Macula.

Authors:  Taimur Hassan; M Usman Akram; Mahmood Akhtar; Shoab Ahmad Khan; Ubaidullah Yasin
Journal:  J Med Syst       Date:  2018-10-04       Impact factor: 4.460

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