Literature DB >> 11705368

A molecular movie at 1.8 A resolution displays the photocycle of photoactive yellow protein, a eubacterial blue-light receptor, from nanoseconds to seconds.

Z Ren1, B Perman, V Srajer, T Y Teng, C Pradervand, D Bourgeois, F Schotte, T Ursby, R Kort, M Wulff, K Moffat.   

Abstract

The photocycle of the bacterial blue-light photoreceptor, photoactive yellow protein, was stimulated by illumination of single crystals by a 7 ns laser pulse. The molecular events were recorded at high resolution by time-resolved X-ray Laue diffraction as they evolved in real time, from 1 ns to seconds after the laser pulse. The complex structural changes during the photocycle at ambient temperature are displayed in a movie of difference electron density maps relative to the dark state. The step critical to entry into the photocycle is identified as flipping of the carbonyl group of the 4-hydroxycinnamic acid chromophore into an adjacent, hydrophobic environment rather than the concomitant isomerization about the double bond of the chromophore tail. The structural perturbation generated at the chromophore propagates throughout the entire protein as a light-induced "protein quake" with its "epicenter" at the carbonyl moiety of the chromophore.

Entities:  

Mesh:

Substances:

Year:  2001        PMID: 11705368     DOI: 10.1021/bi0107142

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  43 in total

1.  Application of singular value decomposition to the analysis of time-resolved macromolecular x-ray data.

Authors:  Marius Schmidt; Sudarshan Rajagopal; Zhong Ren; Keith Moffat
Journal:  Biophys J       Date:  2003-03       Impact factor: 4.033

2.  Ultrafast spectroscopy reveals subnanosecond peptide conformational dynamics and validates molecular dynamics simulation.

Authors:  Sebastian Spörlein; Heiko Carstens; Helmut Satzger; Christian Renner; Raymond Behrendt; Luis Moroder; Paul Tavan; Wolfgang Zinth; Josef Wachtveitl
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-11       Impact factor: 11.205

3.  Crystal structure of a photoactive yellow protein from a sensor histidine kinase: conformational variability and signal transduction.

Authors:  Sudarshan Rajagopal; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2003-01-31       Impact factor: 11.205

4.  Contrasting the excited-state dynamics of the photoactive yellow protein chromophore: protein versus solvent environments.

Authors:  Mikas Vengris; Michael A van der Horst; Goran Zgrablic; Ivo H M van Stokkum; Stefan Haacke; Majed Chergui; Klaas J Hellingwerf; Rienk van Grondelle; Delmar S Larsen
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

5.  Incoherent manipulation of the photoactive yellow protein photocycle with dispersed pump-dump-probe spectroscopy.

Authors:  Delmar S Larsen; Ivo H M van Stokkum; Mikas Vengris; Michael A van Der Horst; Frank L de Weerd; Klaas J Hellingwerf; Rienk van Grondelle
Journal:  Biophys J       Date:  2004-09       Impact factor: 4.033

6.  Protein kinetics: structures of intermediates and reaction mechanism from time-resolved x-ray data.

Authors:  Marius Schmidt; Reinhard Pahl; Vukica Srajer; Spencer Anderson; Zhong Ren; Hyotcherl Ihee; Sudarshan Rajagopal; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2004-03-23       Impact factor: 11.205

7.  Cooperative macromolecular device revealed by meta-analysis of static and time-resolved structures.

Authors:  Zhong Ren; Vukica Srajer; James E Knapp; William E Royer
Journal:  Proc Natl Acad Sci U S A       Date:  2011-12-14       Impact factor: 11.205

8.  pH dependence of the photoactive yellow protein photocycle investigated by time-resolved crystallography.

Authors:  Shailesh Tripathi; Vukica Srajer; Namrta Purwar; Robert Henning; Marius Schmidt
Journal:  Biophys J       Date:  2012-01-18       Impact factor: 4.033

9.  Predicting the signaling state of photoactive yellow protein.

Authors:  Jocelyne Vreede; Wim Crielaard; Klaas J Hellingwerf; Peter G Bolhuis
Journal:  Biophys J       Date:  2005-02-18       Impact factor: 4.033

10.  Visualizing reaction pathways in photoactive yellow protein from nanoseconds to seconds.

Authors:  Hyotcherl Ihee; Sudarshan Rajagopal; Vukica Srajer; Reinhard Pahl; Spencer Anderson; Marius Schmidt; Friedrich Schotte; Philip A Anfinrud; Michael Wulff; Keith Moffat
Journal:  Proc Natl Acad Sci U S A       Date:  2005-05-03       Impact factor: 11.205

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.