Literature DB >> 29952383

Crystal-on-crystal chips for in situ serial diffraction at room temperature.

Zhong Ren1, Medine Ayhan, Sepalika Bandara, Kalinga Bowatte, Indika Kumarapperuma, Semini Gunawardana, Heewhan Shin, Cong Wang, Xiaoli Zeng, Xiaojing Yang.   

Abstract

Recent developments in serial crystallography at X-ray free electron lasers (XFELs) and synchrotrons have been driven by two scientific goals in structural biology - first, static structure determination from nano or microcrystals of membrane proteins and large complexes that are difficult for conventional cryocrystallography, and second, direct observations of transient structural species in biochemical reactions at near atomic resolution. Since room-temperature diffraction experiments naturally demand a large quantity of purified protein, sample economy is critically important for all steps of serial crystallography from crystallization, crystal delivery to data collection. Here we report the development and applications of "crystal-on-crystal" devices to facilitate large-scale in situ serial diffraction experiments on protein crystals of all sizes - large, small, or microscopic. We show that the monocrystalline quartz as a substrate material prevents vapor loss during crystallization and significantly reduces background X-ray scattering. These devices can be readily adopted at XFEL and synchrotron beamlines, which enable efficient delivery of hundreds to millions of crystals to the X-ray beam, with an overall protein consumption per dataset comparable to that of cryocrystallography.

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Year:  2018        PMID: 29952383      PMCID: PMC6057835          DOI: 10.1039/c8lc00489g

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  29 in total

1.  Automated analysis of vapor diffusion crystallization drops with an X-ray beam.

Authors:  Lilian Jacquamet; Jeremy Ohana; Jacques Joly; Franck Borel; Michel Pirocchi; Philippe Charrault; Alain Bertoni; Pascale Israel-Gouy; Philippe Carpentier; Frank Kozielski; Delphine Blot; Jean-Luc Ferrer
Journal:  Structure       Date:  2004-07       Impact factor: 5.006

2.  Accessing protein conformational ensembles using room-temperature X-ray crystallography.

Authors:  James S Fraser; Henry van den Bedem; Avi J Samelson; P Therese Lang; James M Holton; Nathaniel Echols; Tom Alber
Journal:  Proc Natl Acad Sci U S A       Date:  2011-09-14       Impact factor: 11.205

3.  Towards time-resolved serial crystallography in a microfluidic device.

Authors:  Ashtamurthy S Pawate; Vukica Šrajer; Jeremy Schieferstein; Sudipto Guha; Robert Henning; Irina Kosheleva; Marius Schmidt; Zhong Ren; Paul J A Kenis; Sarah L Perry
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-06-27       Impact factor: 1.056

4.  Nanoflow electrospinning serial femtosecond crystallography.

Authors:  Raymond G Sierra; Hartawan Laksmono; Jan Kern; Rosalie Tran; Johan Hattne; Roberto Alonso-Mori; Benedikt Lassalle-Kaiser; Carina Glöckner; Julia Hellmich; Donald W Schafer; Nathaniel Echols; Richard J Gildea; Ralf W Grosse-Kunstleve; Jonas Sellberg; Trevor A McQueen; Alan R Fry; Marc M Messerschmidt; Alan Miahnahri; M Marvin Seibert; Christina Y Hampton; Dmitri Starodub; N Duane Loh; Dimosthenis Sokaras; Tsu-Chien Weng; Petrus H Zwart; Pieter Glatzel; Despina Milathianaki; William E White; Paul D Adams; Garth J Williams; Sébastien Boutet; Athina Zouni; Johannes Messinger; Nicholas K Sauter; Uwe Bergmann; Junko Yano; Vittal K Yachandra; Michael J Bogan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2012-10-18

5.  X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds.

Authors:  Jeremy M Schieferstein; Ashtamurthy S Pawate; Michael J Varel; Sudipto Guha; Ieva Astrauskaite; Robert B Gennis; Paul J A Kenis
Journal:  Lab Chip       Date:  2018-03-13       Impact factor: 6.799

6.  Crystal Structures of Bacterial (6-4) Photolyase Mutants with Impaired DNA Repair Activity.

Authors:  Fan Zhang; Hongju Ma; Kalinga Bowatte; Dennis Kwiatkowski; Esther Mittmann; Heba Qasem; Norbert Krauß; Xiaoli Zeng; Zhong Ren; Patrick Scheerer; Xiaojing Yang; Tilman Lamparter
Journal:  Photochem Photobiol       Date:  2017-01-27       Impact factor: 3.421

7.  Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.

Authors:  Franklin D Fuller; Sheraz Gul; Ruchira Chatterjee; E Sethe Burgie; Iris D Young; Hugo Lebrette; Vivek Srinivas; Aaron S Brewster; Tara Michels-Clark; Jonathan A Clinger; Babak Andi; Mohamed Ibrahim; Ernest Pastor; Casper de Lichtenberg; Rana Hussein; Christopher J Pollock; Miao Zhang; Claudiu A Stan; Thomas Kroll; Thomas Fransson; Clemens Weninger; Markus Kubin; Pierre Aller; Louise Lassalle; Philipp Bräuer; Mitchell D Miller; Muhamed Amin; Sergey Koroidov; Christian G Roessler; Marc Allaire; Raymond G Sierra; Peter T Docker; James M Glownia; Silke Nelson; Jason E Koglin; Diling Zhu; Matthieu Chollet; Sanghoon Song; Henrik Lemke; Mengning Liang; Dimosthenis Sokaras; Roberto Alonso-Mori; Athina Zouni; Johannes Messinger; Uwe Bergmann; Amie K Boal; J Martin Bollinger; Carsten Krebs; Martin Högbom; George N Phillips; Richard D Vierstra; Nicholas K Sauter; Allen M Orville; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

8.  Plant UVR8 photoreceptor senses UV-B by tryptophan-mediated disruption of cross-dimer salt bridges.

Authors:  John M Christie; Andrew S Arvai; Katherine J Baxter; Monika Heilmann; Ashley J Pratt; Andrew O'Hara; Sharon M Kelly; Michael Hothorn; Brian O Smith; Kenichi Hitomi; Gareth I Jenkins; Elizabeth D Getzoff
Journal:  Science       Date:  2012-02-09       Impact factor: 47.728

9.  X-CHIP: an integrated platform for high-throughput protein crystallization and on-the-chip X-ray diffraction data collection.

Authors:  Gera Kisselman; Wei Qiu; Vladimir Romanov; Christine M Thompson; Robert Lam; Kevin P Battaile; Emil F Pai; Nickolay Y Chirgadze
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-05-12

Review 10.  Practical macromolecular cryocrystallography.

Authors:  J W Pflugrath
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-05-27       Impact factor: 1.056

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  6 in total

1.  Ultrafast Structural Changes Decomposed from Serial Crystallographic Data.

Authors:  Zhong Ren
Journal:  J Phys Chem Lett       Date:  2019-11-07       Impact factor: 6.475

2.  Plug-and-play polymer microfluidic chips for hydrated, room temperature, fixed-target serial crystallography.

Authors:  Deepshika Gilbile; Megan L Shelby; Artem Y Lyubimov; Jennifer L Wierman; Diana C F Monteiro; Aina E Cohen; Silvia Russi; Matthew A Coleman; Matthias Frank; Tonya L Kuhl
Journal:  Lab Chip       Date:  2021-12-07       Impact factor: 7.517

3.  Crystal structure of a far-red-sensing cyanobacteriochrome reveals an atypical bilin conformation and spectral tuning mechanism.

Authors:  Sepalika Bandara; Nathan C Rockwell; Xiaoli Zeng; Zhong Ren; Cong Wang; Heewhan Shin; Shelley S Martin; Marcus V Moreno; J Clark Lagarias; Xiaojing Yang
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

4.  Real-Time Measurement of Protein Crystal Growth Rates within the Microfluidic Device to Understand the Microspace Effect.

Authors:  Masatoshi Maeki; Shohei Yamazaki; Reo Takeda; Akihiko Ishida; Hirofumi Tani; Manabu Tokeshi
Journal:  ACS Omega       Date:  2020-07-08

5.  Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis.

Authors:  Masatoshi Maeki; Sho Ito; Reo Takeda; Go Ueno; Akihiko Ishida; Hirofumi Tani; Masaki Yamamoto; Manabu Tokeshi
Journal:  Chem Sci       Date:  2020-08-25       Impact factor: 9.825

6.  An automated platform for in situ serial crystallography at room temperature.

Authors:  Zhong Ren; Cong Wang; Heewhan Shin; Sepalika Bandara; Indika Kumarapperuma; Michael Y Ren; Weijia Kang; Xiaojing Yang
Journal:  IUCrJ       Date:  2020-09-19       Impact factor: 4.769

  6 in total

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