Literature DB >> 34821226

Plug-and-play polymer microfluidic chips for hydrated, room temperature, fixed-target serial crystallography.

Deepshika Gilbile1, Megan L Shelby2, Artem Y Lyubimov3, Jennifer L Wierman4, Diana C F Monteiro5, Aina E Cohen3, Silvia Russi3, Matthew A Coleman2,6, Matthias Frank2,7, Tonya L Kuhl1.   

Abstract

The practice of serial X-ray crystallography (SX) depends on efficient, continuous delivery of hydrated protein crystals while minimizing background scattering. Of the two major types of sample delivery devices, fixed-target devices offer several advantages over widely adopted jet injectors, including: lower sample consumption, clog-free delivery, and the ability to control on-chip crystal density to improve hit rates. Here we present our development of versatile, inexpensive, and robust polymer microfluidic chips for routine and reliable room temperature serial measurements at both synchrotrons and X-ray free electron lasers (XFELs). Our design includes highly X-ray-transparent enclosing thin film layers tuned to minimize scatter background, adaptable sample flow layers tuned to match crystal size, and a large sample area compatible with both raster scanning and rotation based serial data collection. The optically transparent chips can be used both for in situ protein crystallization (to eliminate crystal handling) or crystal slurry loading, with prepared samples stable for weeks in a humidified environment and for several hours in ambient conditions. Serial oscillation crystallography, using a multi-crystal rotational data collection approach, at a microfocus synchrotron beamline (SSRL, beamline 12-1) was used to benchmark the performance of the chips. High-resolution structures (1.3-2.7 Å) were collected from five different proteins - hen egg white lysozyme, thaumatin, bovine liver catalase, concanavalin-A (type VI), and SARS-CoV-2 nonstructural protein NSP5. Overall, our modular fabrication approach enables precise control over the cross-section of materials in the X-ray beam path and facilitates chip adaption to different sample and beamline requirements for user-friendly, straightforward diffraction measurements at room temperature.

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Year:  2021        PMID: 34821226      PMCID: PMC8915944          DOI: 10.1039/d1lc00810b

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   7.517


  63 in total

1.  Graphene-based microfluidics for serial crystallography.

Authors:  Shuo Sui; Yuxi Wang; Kristopher W Kolewe; Vukica Srajer; Robert Henning; Jessica D Schiffman; Christos Dimitrakopoulos; Sarah L Perry
Journal:  Lab Chip       Date:  2016-08-02       Impact factor: 6.799

2.  A novel sample delivery system based on circular motion for in situ serial synchrotron crystallography.

Authors:  Feng-Zhu Zhao; Bo Sun; Li Yu; Qing-Jie Xiao; Zhi-Jun Wang; Liang-Liang Chen; Huan Liang; Qi-Sheng Wang; Jian-Hua He; Da-Chuan Yin
Journal:  Lab Chip       Date:  2020-10-27       Impact factor: 6.799

Review 3.  Micro-crystallography comes of age.

Authors:  Janet L Smith; Robert F Fischetti; Masaki Yamamoto
Journal:  Curr Opin Struct Biol       Date:  2012-09-26       Impact factor: 6.809

4.  Time-resolved serial crystallography captures high-resolution intermediates of photoactive yellow protein.

Authors:  Jason Tenboer; Shibom Basu; Nadia Zatsepin; Kanupriya Pande; Despina Milathianaki; Matthias Frank; Mark Hunter; Sébastien Boutet; Garth J Williams; Jason E Koglin; Dominik Oberthuer; Michael Heymann; Christopher Kupitz; Chelsie Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Uwe Weierstall; Daniel James; Dingjie Wang; Thomas Grant; Anton Barty; Oleksandr Yefanov; Jennifer Scales; Cornelius Gati; Carolin Seuring; Vukica Srajer; Robert Henning; Peter Schwander; Raimund Fromme; Abbas Ourmazd; Keith Moffat; Jasper J Van Thor; John C H Spence; Petra Fromme; Henry N Chapman; Marius Schmidt
Journal:  Science       Date:  2014-12-05       Impact factor: 47.728

5.  PHENIX: a comprehensive Python-based system for macromolecular structure solution.

Authors:  Paul D Adams; Pavel V Afonine; Gábor Bunkóczi; Vincent B Chen; Ian W Davis; Nathaniel Echols; Jeffrey J Headd; Li-Wei Hung; Gary J Kapral; Ralf W Grosse-Kunstleve; Airlie J McCoy; Nigel W Moriarty; Robert Oeffner; Randy J Read; David C Richardson; Jane S Richardson; Thomas C Terwilliger; Peter H Zwart
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

6.  Tacky cyclic olefin copolymer: a biocompatible bonding technique for the fabrication of microfluidic channels in COC.

Authors:  Nico Keller; Tobias M Nargang; Matthias Runck; Frederik Kotz; Andreas Striegel; Kai Sachsenheimer; Denis Klemm; Kerstin Länge; Matthias Worgull; Christiane Richter; Dorothea Helmer; Bastian E Rapp
Journal:  Lab Chip       Date:  2016-04-26       Impact factor: 6.799

Review 7.  Strategies for sample delivery for femtosecond crystallography.

Authors:  Isabelle Martiel; Henrike M Müller-Werkmeister; Aina E Cohen
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-02-19       Impact factor: 7.652

8.  A simple and versatile microfluidic device for efficient biomacromolecule crystallization and structural analysis by serial crystallography.

Authors:  Raphaël de Wijn; Oliver Hennig; Jennifer Roche; Sylvain Engilberge; Kevin Rollet; Pablo Fernandez-Millan; Karl Brillet; Heike Betat; Mario Mörl; Alain Roussel; Eric Girard; Christoph Mueller-Dieckmann; Gavin C Fox; Vincent Olieric; José A Gavira; Bernard Lorber; Claude Sauter
Journal:  IUCrJ       Date:  2019-04-19       Impact factor: 4.769

9.  Nylon mesh-based sample holder for fixed-target serial femtosecond crystallography.

Authors:  Donghyeon Lee; Sangwon Baek; Jaehyun Park; Keondo Lee; Jangwoo Kim; Sang Jae Lee; Wan Kyun Chung; Jong-Lam Lee; Yunje Cho; Ki Hyun Nam
Journal:  Sci Rep       Date:  2019-05-06       Impact factor: 4.379

10.  Crystallography on a chip - without the chip: sheet-on-sheet sandwich.

Authors:  R Bruce Doak; Gabriela Nass Kovacs; Alexander Gorel; Lutz Foucar; Thomas R M Barends; Marie Luise Grünbein; Mario Hilpert; Marco Kloos; Christopher M Roome; Robert L Shoeman; Miriam Stricker; Kensuke Tono; Daehyun You; Kiyoshi Ueda; Darren A Sherrell; Robin L Owen; Ilme Schlichting
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-10-02       Impact factor: 7.652

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