Literature DB >> 29469138

X-ray transparent microfluidic platforms for membrane protein crystallization with microseeds.

Jeremy M Schieferstein1, Ashtamurthy S Pawate, Michael J Varel, Sudipto Guha, Ieva Astrauskaite, Robert B Gennis, Paul J A Kenis.   

Abstract

Crystallization of membrane proteins is a critical step for uncovering atomic resolution 3-D structures and elucidating structure-function relationships. Microseeding, the process of transferring sub-microscopic crystal nuclei from initial screens into new crystallization experiments, is an effective, yet underutilized approach to grow crystals suitable for X-ray crystallography. Here, we report simplified methods for crystallization of membrane proteins that utilize microseeding in X-ray transparent microfluidic chips. First, a microfluidic method for introduction of microseed dilutions into metastable crystallization experiments is demonstrated for photoactive yellow protein and cytochrome bo3 oxidase. As microseed concentration decreased, the number of crystals decreased while the average size increased. Second, we demonstrate a microfluidic chip for microseed screening, where many crystallization conditions were formulated on-chip prior to mixing with microseeds. Crystallization composition, crystal size, and diffraction data were collected and mapped on phase diagrams, which revealed that crystals of similar diffraction quality and size typically grow in distinct regions of the phase diagram.

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Year:  2018        PMID: 29469138      PMCID: PMC5849577          DOI: 10.1039/c7lc01141e

Source DB:  PubMed          Journal:  Lab Chip        ISSN: 1473-0189            Impact factor:   6.799


  44 in total

1.  A droplet-based, composite PDMS/glass capillary microfluidic system for evaluating protein crystallization conditions by microbatch and vapor-diffusion methods with on-chip X-ray diffraction.

Authors:  Bo Zheng; Joshua D Tice; L Spencer Roach; Rustem F Ismagilov
Journal:  Angew Chem Int Ed Engl       Date:  2004-05-03       Impact factor: 15.336

Review 2.  Methods for separating nucleation and growth in protein crystallisation.

Authors:  Naomi E Chayen
Journal:  Prog Biophys Mol Biol       Date:  2005-07       Impact factor: 3.667

3.  Semi-automated microseeding of nanolitre crystallization experiments.

Authors:  Thomas S Walter; Erika J Mancini; Jan Kadlec; Stephen C Graham; René Assenberg; Jingshan Ren; Sarah Sainsbury; Raymond J Owens; David I Stuart; Jonathan M Grimes; Karl Harlos
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2007-12-20

4.  Microseed matrix screening for optimization in protein crystallization: what have we learned?

Authors:  Allan D'Arcy; Terese Bergfors; Sandra W Cowan-Jacob; May Marsh
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-08-29       Impact factor: 1.056

5.  Approaches to automated protein crystal harvesting.

Authors:  Marc C Deller; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2014-01-28       Impact factor: 1.056

6.  Rapid Prototyping of Microfluidic Systems in Poly(dimethylsiloxane).

Authors:  D C Duffy; J C McDonald; O J Schueller; G M Whitesides
Journal:  Anal Chem       Date:  1998-12-01       Impact factor: 6.986

7.  The xanthopsins: a new family of eubacterial blue-light photoreceptors.

Authors:  R Kort; W D Hoff; M Van West; A R Kroon; S M Hoffer; K H Vlieg; W Crielaand; J J Van Beeumen; K J Hellingwerf
Journal:  EMBO J       Date:  1996-07-01       Impact factor: 11.598

8.  Crystallization and preliminary X-ray crystallographic analysis of sterol transcription factor Upc2 from Saccharomyces cerevisiae.

Authors:  Subin Ha; Junsen Tong; Huiseon Yang; Hyung-Seop Youn; Soo Hyun Eom; Young Jun Im
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2013-01-31

9.  Promoting crystallization of antibody-antigen complexes via microseed matrix screening.

Authors:  Galina Obmolova; Thomas J Malia; Alexey Teplyakov; Raymond Sweet; Gary L Gilliland
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-07-14

10.  Microseeding - a powerful tool for crystallizing proteins complexed with hydrolyzable substrates.

Authors:  Christine Oswald; Sander H J Smits; Erhard Bremer; Lutz Schmitt
Journal:  Int J Mol Sci       Date:  2008-07-08       Impact factor: 6.208

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  3 in total

1.  Crystal-on-crystal chips for in situ serial diffraction at room temperature.

Authors:  Zhong Ren; Medine Ayhan; Sepalika Bandara; Kalinga Bowatte; Indika Kumarapperuma; Semini Gunawardana; Heewhan Shin; Cong Wang; Xiaoli Zeng; Xiaojing Yang
Journal:  Lab Chip       Date:  2018-07-24       Impact factor: 6.799

2.  Real-Time Measurement of Protein Crystal Growth Rates within the Microfluidic Device to Understand the Microspace Effect.

Authors:  Masatoshi Maeki; Shohei Yamazaki; Reo Takeda; Akihiko Ishida; Hirofumi Tani; Manabu Tokeshi
Journal:  ACS Omega       Date:  2020-07-08

3.  Room-temperature crystallography using a microfluidic protein crystal array device and its application to protein-ligand complex structure analysis.

Authors:  Masatoshi Maeki; Sho Ito; Reo Takeda; Go Ueno; Akihiko Ishida; Hirofumi Tani; Masaki Yamamoto; Manabu Tokeshi
Journal:  Chem Sci       Date:  2020-08-25       Impact factor: 9.825

  3 in total

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