Literature DB >> 34162965

Polyimide mesh-based sample holder with irregular crystal mounting holes for fixed-target serial crystallography.

Ki Hyun Nam1, Jihan Kim2, Yunje Cho2.   

Abstract

The serial crystallography (SX) technique enables the determination of the room-temperature structure of a macromolecule while causing minimal radiation damage, as well as the visualization of the molecular dynamics by time-resolved studies. The fixed-target (FT) scanning approach is one method for SX sample delivery that minimizes sample consumption and minimizes physical damage to crystals during data collection. Settling of the crystals on the sample holder in random orientation is important for complete three dimensional data collection. To increase the random orientation of crystals on the sample holder, we developed a polyimide mesh-based sample holder with irregular crystal mounting holes for FT-SX. The polyimide mesh was fabricated using a picosecond laser. Each hole in the polyimide mesh has irregularly shaped holes because of laser thermal damage, which may cause more crystals to settle at random orientations compared to regular shaped sample holders. A crystal sample was spread onto a polyimide-mesh, and a polyimide film was added to both sides to prevent dehydration. Using this sample holder, FT-SX was performed at synchrotron and determined the room-temperature lysozyme structure at 1.65 Å. The polyimide mesh with irregularly shaped holes will allow for expanded applications in sample delivery for FT-SX experiments.

Entities:  

Year:  2021        PMID: 34162965     DOI: 10.1038/s41598-021-92687-x

Source DB:  PubMed          Journal:  Sci Rep        ISSN: 2045-2322            Impact factor:   4.379


  32 in total

1.  Liquid application method for time-resolved analyses by serial synchrotron crystallography.

Authors:  Pedram Mehrabi; Eike C Schulz; Michael Agthe; Sam Horrell; Gleb Bourenkov; David von Stetten; Jan-Philipp Leimkohl; Hendrik Schikora; Thomas R Schneider; Arwen R Pearson; Friedjof Tellkamp; R J Dwayne Miller
Journal:  Nat Methods       Date:  2019-09-16       Impact factor: 28.547

2.  Lipidic cubic phase injector facilitates membrane protein serial femtosecond crystallography.

Authors:  Uwe Weierstall; Daniel James; Chong Wang; Thomas A White; Dingjie Wang; Wei Liu; John C H Spence; R Bruce Doak; Garrett Nelson; Petra Fromme; Raimund Fromme; Ingo Grotjohann; Christopher Kupitz; Nadia A Zatsepin; Haiguang Liu; Shibom Basu; Daniel Wacker; Gye Won Han; Vsevolod Katritch; Sébastien Boutet; Marc Messerschmidt; Garth J Williams; Jason E Koglin; M Marvin Seibert; Markus Klinker; Cornelius Gati; Robert L Shoeman; Anton Barty; Henry N Chapman; Richard A Kirian; Kenneth R Beyerlein; Raymond C Stevens; Dianfan Li; Syed T A Shah; Nicole Howe; Martin Caffrey; Vadim Cherezov
Journal:  Nat Commun       Date:  2014       Impact factor: 14.919

3.  Acoustic Injectors for Drop-On-Demand Serial Femtosecond Crystallography.

Authors:  Christian G Roessler; Rakhi Agarwal; Marc Allaire; Roberto Alonso-Mori; Babak Andi; José F R Bachega; Martin Bommer; Aaron S Brewster; Michael C Browne; Ruchira Chatterjee; Eunsun Cho; Aina E Cohen; Matthew Cowan; Sammy Datwani; Victor L Davidson; Jim Defever; Brent Eaton; Richard Ellson; Yiping Feng; Lucien P Ghislain; James M Glownia; Guangye Han; Johan Hattne; Julia Hellmich; Annie Héroux; Mohamed Ibrahim; Jan Kern; Anthony Kuczewski; Henrik T Lemke; Pinghua Liu; Lars Majlof; William M McClintock; Stuart Myers; Silke Nelsen; Joe Olechno; Allen M Orville; Nicholas K Sauter; Alexei S Soares; S Michael Soltis; Heng Song; Richard G Stearns; Rosalie Tran; Yingssu Tsai; Monarin Uervirojnangkoorn; Carrie M Wilmot; Vittal Yachandra; Junko Yano; Erik T Yukl; Diling Zhu; Athina Zouni
Journal:  Structure       Date:  2016-03-17       Impact factor: 5.006

Review 4.  Serial femtosecond crystallography: A revolution in structural biology.

Authors:  Jose M Martin-Garcia; Chelsie E Conrad; Jesse Coe; Shatabdi Roy-Chowdhury; Petra Fromme
Journal:  Arch Biochem Biophys       Date:  2016-04-30       Impact factor: 4.013

Review 5.  Serial femtosecond crystallography: the first five years.

Authors:  Ilme Schlichting
Journal:  IUCrJ       Date:  2015-02-03       Impact factor: 4.769

6.  Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons.

Authors:  Tobias Weinert; Natacha Olieric; Robert Cheng; Steffen Brünle; Daniel James; Dmitry Ozerov; Dardan Gashi; Laura Vera; May Marsh; Kathrin Jaeger; Florian Dworkowski; Ezequiel Panepucci; Shibom Basu; Petr Skopintsev; Andrew S Doré; Tian Geng; Robert M Cooke; Mengning Liang; Andrea E Prota; Valerie Panneels; Przemyslaw Nogly; Ulrich Ermler; Gebhard Schertler; Michael Hennig; Michel O Steinmetz; Meitian Wang; Jörg Standfuss
Journal:  Nat Commun       Date:  2017-09-14       Impact factor: 14.919

Review 7.  Strategies for sample delivery for femtosecond crystallography.

Authors:  Isabelle Martiel; Henrike M Müller-Werkmeister; Aina E Cohen
Journal:  Acta Crystallogr D Struct Biol       Date:  2019-02-19       Impact factor: 7.652

8.  Molecular Dynamics-From Small Molecules to Macromolecules.

Authors:  Ki Hyun Nam
Journal:  Int J Mol Sci       Date:  2021-04-05       Impact factor: 5.923

9.  Room-Temperature Structure of Xylitol-Bound Glucose Isomerase by Serial Crystallography: Xylitol Binding in the M1 Site Induces Release of Metal Bound in the M2 Site.

Authors:  Ki Hyun Nam
Journal:  Int J Mol Sci       Date:  2021-04-09       Impact factor: 5.923

10.  Room-temperature macromolecular serial crystallography using synchrotron radiation.

Authors:  Francesco Stellato; Dominik Oberthür; Mengning Liang; Richard Bean; Cornelius Gati; Oleksandr Yefanov; Anton Barty; Anja Burkhardt; Pontus Fischer; Lorenzo Galli; Richard A Kirian; Jan Meyer; Saravanan Panneerselvam; Chun Hong Yoon; Fedor Chervinskii; Emily Speller; Thomas A White; Christian Betzel; Alke Meents; Henry N Chapman
Journal:  IUCrJ       Date:  2014-05-30       Impact factor: 4.769

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  3 in total

1.  Combination of an inject-and-transfer system for serial femtosecond crystallography.

Authors:  Keondo Lee; Jihan Kim; Sangwon Baek; Jaehyun Park; Sehan Park; Jong-Lam Lee; Wan Kyun Chung; Yunje Cho; Ki Hyun Nam
Journal:  J Appl Crystallogr       Date:  2022-07-05       Impact factor: 4.868

2.  Beef tallow injection matrix for serial crystallography.

Authors:  Ki Hyun Nam
Journal:  Sci Rep       Date:  2022-01-13       Impact factor: 4.379

3.  Hit and Indexing Rate in Serial Crystallography: Incomparable Statistics.

Authors:  Ki Hyun Nam
Journal:  Front Mol Biosci       Date:  2022-03-25
  3 in total

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