| Literature DB >> 27144925 |
Erin A Urquhart1,2, Stephen H Jones1,3, Jong W Yu2, Brian M Schuster2, Ashley L Marcinkiewicz2, Cheryl A Whistler1,2, Vaughn S Cooper4.
Abstract
Reports from state health departments and the Centers for Disease Control and Prevention indicate that the annual number of reported human vibriosis cases in New England has increased in the past decade. Concurrently, there has been a shift in both the spatial distribution and seasonal detection of Vibrio spp. throughout the region based on limited monitoring data. To determine environmental factors that may underlie these emerging conditions, this study focuses on a long-term database of Vibrio parahaemolyticus concentrations in oyster samples generated from data collected from the Great Bay Estuary, New Hampshire over a period of seven consecutive years. Oyster samples from two distinct sites were analyzed for V. parahaemolyticus abundance, noting significant relationships with various biotic and abiotic factors measured during the same period of study. We developed a predictive modeling tool capable of estimating the likelihood of V. parahaemolyticus presence in coastal New Hampshire oysters. Results show that the inclusion of chlorophyll a concentration to an empirical model otherwise employing only temperature and salinity variables, offers improved predictive capability for modeling the likelihood of V. parahaemolyticus in the Great Bay Estuary.Entities:
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Year: 2016 PMID: 27144925 PMCID: PMC4856376 DOI: 10.1371/journal.pone.0155018
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Annual cases of vibriosis in humans for Maine (ME), Massachusetts (MA), New Hampshire (NH), and Connecticut (CT) for 2000 through 2013.
Zero cases are represented by missing vertical bars. Identified species include V. parahaemolyticus, V. vulnificus, V. cholerae, V. alginolyticus, V. fluvialis, and ‘unknown’.
Fig 2Map of Great Bay Estuary: white circles represent the sampling stations for this study.
Correlation coefficients for log-transformed V. parahaemolyticus abundance and selected environmental variables.
| Temp | Saln | DO | pH | Turb | TDN | Chla | PO4 | Rain | |
|---|---|---|---|---|---|---|---|---|---|
| 0.49 | 0.27 | 0.38 | 0.12 | 0.13 | 0.14 | 0.29 | 0.12 | 0.00 | |
| 2.3E-09 | 1.8E-03 | 6.1E-06 | 0.17 | 0.14 | 0.10 | 8.6E-04 | 0.18 | 0.98 |
Abbreviations correspond to environmental parameter names in rows. Significant correlations are at the alpha (p<0.05) level.
Fig 3Boxplot showing V. parahaemolyticus concentration (MPN g-1) for station and year (A), and for station and month (B) for Oyster River (OR) and Nannie Island (NI).
Hollow circles represent outliers; dashed vertical lines illustrate ICQ range; bold horizontal bars represent median Vp concentration value.
V. parahaemolyticus performance metrics.
| Metric | ||
|---|---|---|
| AIC | 95.46 | 95.42 |
| MCC | 0.33 | 0.46 |
| TPR | 0.37 | 0.52 |
| TNR | 0.91 | 0.91 |
| PPV | 0.56 | 0.64 |
| NPV | 0.83 | 0.86 |
AIC, Akaike’s Information Criterion; MCC, Matthews Correlation Coefficient; TPR, True Positive Rate; TNR, True Negative Rate; PPV, Positive Predictive Value; NPV, Negative Predictive Value.
Fig 4Plots showing the relationship between Vp2 predicted V. parahaemolyticus probability and (A) surface temperature (°C), (B) salinity (ppt), and (C) chlorophyll a concentration (mg/l). Linear trend lines denoted by solid black line. Performance of Vp2 binary classification presented as a boxplot comparing observed presence and absence with modeled probability (D).