Literature DB >> 33963356

Understanding the invisible hands of sample preparation for cryo-EM.

Giulia Weissenberger1,2, Rene J M Henderikx1,2, Peter J Peters3.   

Abstract

Cryo-electron microscopy (cryo-EM) is rapidly becoming an attractive method in the field of structural biology. With the exploding popularity of cryo-EM, sample preparation must evolve to prevent congestion in the workflow. The dire need for improved microscopy samples has led to a diversification of methods. This Review aims to categorize and explain the principles behind various techniques in the preparation of vitrified samples for the electron microscope. Various aspects and challenges in the workflow are discussed, from sample optimization and carriers to deposition and vitrification. Reliable and versatile specimen preparation remains a challenge, and we hope to give guidelines and posit future directions for improvement.

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Year:  2021        PMID: 33963356     DOI: 10.1038/s41592-021-01130-6

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   47.990


  89 in total

Review 1.  Electronic detectors for electron microscopy.

Authors:  A R Faruqi; R Henderson
Journal:  Curr Opin Struct Biol       Date:  2007-10-29       Impact factor: 6.809

Review 2.  Cryo-EM in drug discovery: achievements, limitations and prospects.

Authors:  Jean-Paul Renaud; Ashwin Chari; Claudio Ciferri; Wen-Ti Liu; Hervé-William Rémigy; Holger Stark; Christian Wiesmann
Journal:  Nat Rev Drug Discov       Date:  2018-06-08       Impact factor: 84.694

3.  Biochemistry. The resolution revolution.

Authors:  Werner Kühlbrandt
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

4.  Fibril structure of amyloid-β(1-42) by cryo-electron microscopy.

Authors:  Lothar Gremer; Daniel Schölzel; Carla Schenk; Elke Reinartz; Jörg Labahn; Raimond B G Ravelli; Markus Tusche; Carmen Lopez-Iglesias; Wolfgang Hoyer; Henrike Heise; Dieter Willbold; Gunnar F Schröder
Journal:  Science       Date:  2017-09-07       Impact factor: 47.728

Review 5.  Big data in cryoEM: automated collection, processing and accessibility of EM data.

Authors:  Philip R Baldwin; Yong Zi Tan; Edward T Eng; William J Rice; Alex J Noble; Carl J Negro; Michael A Cianfrocco; Clinton S Potter; Bridget Carragher
Journal:  Curr Opin Microbiol       Date:  2017-10-31       Impact factor: 7.934

6.  Cryo-EM structure of the 2019-nCoV spike in the prefusion conformation.

Authors:  Daniel Wrapp; Nianshuang Wang; Kizzmekia S Corbett; Jory A Goldsmith; Ching-Lin Hsieh; Olubukola Abiona; Barney S Graham; Jason S McLellan
Journal:  Science       Date:  2020-02-19       Impact factor: 47.728

7.  Beam-induced motion of vitrified specimen on holey carbon film.

Authors:  Axel F Brilot; James Z Chen; Anchi Cheng; Junhua Pan; Stephen C Harrison; Clinton S Potter; Bridget Carragher; Richard Henderson; Nikolaus Grigorieff
Journal:  J Struct Biol       Date:  2012-02-16       Impact factor: 2.867

8.  Cryo-EM structures of tau filaments from Alzheimer's disease.

Authors:  Anthony W P Fitzpatrick; Benjamin Falcon; Shaoda He; Alexey G Murzin; Garib Murshudov; Holly J Garringer; R Anthony Crowther; Bernardino Ghetti; Michel Goedert; Sjors H W Scheres
Journal:  Nature       Date:  2017-07-05       Impact factor: 49.962

9.  Structure, Function, and Antigenicity of the SARS-CoV-2 Spike Glycoprotein.

Authors:  Alexandra C Walls; Young-Jun Park; M Alejandra Tortorici; Abigail Wall; Andrew T McGuire; David Veesler
Journal:  Cell       Date:  2020-03-09       Impact factor: 41.582

10.  Structure of mouse coronavirus spike protein complexed with receptor reveals mechanism for viral entry.

Authors:  Jian Shang; Yushun Wan; Chang Liu; Boyd Yount; Kendra Gully; Yang Yang; Ashley Auerbach; Guiqing Peng; Ralph Baric; Fang Li
Journal:  PLoS Pathog       Date:  2020-03-09       Impact factor: 6.823

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  13 in total

Review 1.  Protein Design: From the Aspect of Water Solubility and Stability.

Authors:  Rui Qing; Shilei Hao; Eva Smorodina; David Jin; Arthur Zalevsky; Shuguang Zhang
Journal:  Chem Rev       Date:  2022-08-03       Impact factor: 72.087

2.  Model building of protein complexes from intermediate-resolution cryo-EM maps with deep learning-guided automatic assembly.

Authors:  Jiahua He; Peicong Lin; Ji Chen; Hong Cao; Sheng-You Huang
Journal:  Nat Commun       Date:  2022-07-13       Impact factor: 17.694

3.  Structure of Klebsiella pneumoniae adenosine monophosphate nucleosidase.

Authors:  Brian C Richardson; Roger Shek; Wesley C Van Voorhis; Jarrod B French
Journal:  PLoS One       Date:  2022-10-20       Impact factor: 3.752

4.  Perspective: Biochemical and Physical Constraints Associated With Preparing Thin Specimens for Single-Particle Cryo-EM.

Authors:  Bong-Gyoon Han; Max Armstrong; Daniel A Fletcher; Robert M Glaeser
Journal:  Front Mol Biosci       Date:  2022-04-26

5.  Automated vitrification of cryo-EM samples with controllable sample thickness using suction and real-time optical inspection.

Authors:  Roman I Koning; Hildo Vader; Martijn van Nugteren; Peter A Grocutt; Wen Yang; Ludovic L R Renault; Abraham J Koster; Arnold C F Kamp; Michael Schwertner
Journal:  Nat Commun       Date:  2022-05-27       Impact factor: 17.694

Review 6.  Using cryo-EM to uncover mechanisms of bacterial transcriptional regulation.

Authors:  David M Wood; Renwick C J Dobson; Christopher R Horne
Journal:  Biochem Soc Trans       Date:  2021-12-17       Impact factor: 5.407

Review 7.  Structural Biology Illuminates Molecular Determinants of Broad Ebolavirus Neutralization by Human Antibodies for Pan-Ebolavirus Therapeutic Development.

Authors:  Charles D Murin; Pavlo Gilchuk; James E Crowe; Andrew B Ward
Journal:  Front Immunol       Date:  2022-01-10       Impact factor: 7.561

Review 8.  Recent Technical Advances in Sample Preparation for Single-Particle Cryo-EM.

Authors:  Yixin Xu; Shangyu Dang
Journal:  Front Mol Biosci       Date:  2022-06-24

9.  Automated systematic evaluation of cryo-EM specimens with SmartScope.

Authors:  Jonathan Bouvette; Qinwen Huang; Amanda A Riccio; William C Copeland; Alberto Bartesaghi; Mario J Borgnia
Journal:  Elife       Date:  2022-08-23       Impact factor: 8.713

10.  Forty years in cryoEM of membrane proteins.

Authors:  Werner Kühlbrandt
Journal:  Microscopy (Oxf)       Date:  2022-02-18       Impact factor: 1.571

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