Literature DB >> 29867291

PROTEINS, INTERFACES, AND CRYO-EM GRIDS.

Robert M Glaeser1.   

Abstract

It has become clear that the standard cartoon, in which macromolecular particles prepared for electron cryo-microscopy are shown to be surrounded completely by vitreous ice, often is not accurate. In particular, the standard picture does not include the fact that diffusion to the air-water interface, followed by adsorption and possibly denaturation, can occur on the time scale that normally is required to make thin specimens. The extensive literature on interaction of proteins with the air-water interface suggests that many proteins can bind to the interface, either directly or indirectly via a sacrificial layer of already-denatured protein. In the process, the particles of interest can, in some cases, become preferentially oriented, and in other cases they can be damaged and/or aggregated at the surface. Thus, although a number of methods and recipes have evolved for dealing with protein complexes that prove to be difficult, making good cryo-grids can still be a major challenge for each new type of specimen. Recognition that the air-water interface is a very dangerous place to be has inspired work on some novel approaches for preparing cryo-grids. At the moment, two of the most promising ones appear to be: (1) thin and vitrify the specimen much faster than is done currently or (2) immobilize the particles onto a structure-friendly support film so that they cannot diffuse to the air-water interface.

Entities:  

Keywords:  Interfacial adsorption; affinity support films; preferential orientation; protein denaturation

Year:  2017        PMID: 29867291      PMCID: PMC5983355          DOI: 10.1016/j.cocis.2017.12.009

Source DB:  PubMed          Journal:  Curr Opin Colloid Interface Sci        ISSN: 1359-0294            Impact factor:   6.448


  55 in total

1.  Structural Conformation of Bovine Serum Albumin Layers at the Air-Water Interface Studied by Neutron Reflection.

Authors: 
Journal:  J Colloid Interface Sci       Date:  1999-05-15       Impact factor: 8.128

2.  Do protein molecules unfold in a simple shear flow?

Authors:  Juan Jaspe; Stephen J Hagen
Journal:  Biophys J       Date:  2006-08-04       Impact factor: 4.033

3.  Importance of physical vs. chemical interactions in surface shear rheology.

Authors:  Peter A Wierenga; Hans Kosters; Maarten R Egmond; Alphons G J Voragen; Harmen H J de Jongh
Journal:  Adv Colloid Interface Sci       Date:  2006-01-27       Impact factor: 12.984

4.  Determination of the inelastic mean free path in ice by examination of tilted vesicles and automated most probable loss imaging.

Authors:  R Grimm; D Typke; M Bärmann; W Baumeister
Journal:  Ultramicroscopy       Date:  1996-07       Impact factor: 2.689

5.  Single-step antibody-based affinity cryo-electron microscopy for imaging and structural analysis of macromolecular assemblies.

Authors:  Guimei Yu; Frank Vago; Dongsheng Zhang; Jonathan E Snyder; Rui Yan; Ci Zhang; Christopher Benjamin; Xi Jiang; Richard J Kuhn; Philip Serwer; David H Thompson; Wen Jiang
Journal:  J Struct Biol       Date:  2014-04-26       Impact factor: 2.867

6.  Liposomes on a streptavidin crystal: a system to study membrane proteins by cryo-EM.

Authors:  Liguo Wang; Fred J Sigworth
Journal:  Methods Enzymol       Date:  2010       Impact factor: 1.600

7.  Streptavidin crystals as nanostructured supports and image-calibration references for cryo-EM data collection.

Authors:  Liguo Wang; Puey Ounjai; Fred J Sigworth
Journal:  J Struct Biol       Date:  2008-08-05       Impact factor: 2.867

8.  Antibody-based affinity cryo-EM grid.

Authors:  Guimei Yu; Kunpeng Li; Wen Jiang
Journal:  Methods       Date:  2016-01-21       Impact factor: 3.608

9.  Cryo-EM structure of a metazoan separase-securin complex at near-atomic resolution.

Authors:  Andreas Boland; Thomas G Martin; Ziguo Zhang; Jing Yang; Xiao-Chen Bai; Leifu Chang; Sjors H W Scheres; David Barford
Journal:  Nat Struct Mol Biol       Date:  2017-03-06       Impact factor: 15.369

10.  Controlling protein adsorption on graphene for cryo-EM using low-energy hydrogen plasmas.

Authors:  Christopher J Russo; Lori A Passmore
Journal:  Nat Methods       Date:  2014-04-20       Impact factor: 28.547

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  31 in total

1.  Current outcomes when optimizing 'standard' sample preparation for single-particle cryo-EM.

Authors:  B Carragher; Y Cheng; A Frost; R M Glaeser; G C Lander; E Nogales; H-W Wang
Journal:  J Microsc       Date:  2019-10-07       Impact factor: 1.758

Review 2.  Challenges and opportunities in cryo-EM single-particle analysis.

Authors:  Dmitry Lyumkis
Journal:  J Biol Chem       Date:  2019-02-25       Impact factor: 5.157

Review 3.  Present and Emerging Methodologies in Cryo-EM Single-Particle Analysis.

Authors:  Mengyu Wu; Gabriel C Lander
Journal:  Biophys J       Date:  2020-09-01       Impact factor: 4.033

4.  Cryo-EM: Ice Is Nice, but Good Ice Can Be Hard to Find.

Authors:  Edward H Egelman
Journal:  Biophys J       Date:  2020-02-01       Impact factor: 4.033

5.  Cryo-EM with sub-1 Å specimen movement.

Authors:  Katerina Naydenova; Peipei Jia; Christopher J Russo
Journal:  Science       Date:  2020-10-09       Impact factor: 47.728

6.  Industrial cryo-EM facility setup and management.

Authors:  Kasim Sader; Rishi Matadeen; Pablo Castro Hartmann; Tor Halsan; Chris Schlichten
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-04-06       Impact factor: 7.652

7.  Fusion of DARPin to Aldolase Enables Visualization of Small Protein by Cryo-EM.

Authors:  Qing Yao; Sara J Weaver; Jee-Young Mock; Grant J Jensen
Journal:  Structure       Date:  2019-05-09       Impact factor: 5.006

8.  From Tube to Structure: SPA Cryo-EM Workflow Using Apoferritin as an Example.

Authors:  Christoph A Diebolder; Rebecca S Dillard; Ludovic Renault
Journal:  Methods Mol Biol       Date:  2021

9.  Solid-Phase Synthesis of Megamolecules.

Authors:  Blaise R Kimmel; Justin A Modica; Kelly Parker; Vinayak Dravid; Milan Mrksich
Journal:  J Am Chem Soc       Date:  2020-03-03       Impact factor: 15.419

10.  A simple and robust procedure for preparing graphene-oxide cryo-EM grids.

Authors:  Eugene Palovcak; Feng Wang; Shawn Q Zheng; Zanlin Yu; Sam Li; Miguel Betegon; David Bulkley; David A Agard; Yifan Cheng
Journal:  J Struct Biol       Date:  2018-07-11       Impact factor: 2.867

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