Literature DB >> 26328834

Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization.

Anders S Christensen1, Marcus Elstner2, Qiang Cui1.   

Abstract

Semi-empirical quantum mechanical methods traditionally expand the electron density in a minimal, valence-only electron basis set. The minimal-basis approximation causes molecular polarization to be underestimated, and hence intermolecular interaction energies are also underestimated, especially for intermolecular interactions involving charged species. In this work, the third-order self-consistent charge density functional tight-binding method (DFTB3) is augmented with an auxiliary response density using the chemical-potential equalization (CPE) method and an empirical dispersion correction (D3). The parameters in the CPE and D3 models are fitted to high-level CCSD(T) reference interaction energies for a broad range of chemical species, as well as dipole moments calculated at the DFT level; the impact of including polarizabilities of molecules in the parameterization is also considered. Parameters for the elements H, C, N, O, and S are presented. The Root Mean Square Deviation (RMSD) interaction energy is improved from 6.07 kcal/mol to 1.49 kcal/mol for interactions with one charged species, whereas the RMSD is improved from 5.60 kcal/mol to 1.73 for a set of 9 salt bridges, compared to uncorrected DFTB3. For large water clusters and complexes that are dominated by dispersion interactions, the already satisfactory performance of the DFTB3-D3 model is retained; polarizabilities of neutral molecules are also notably improved. Overall, the CPE extension of DFTB3-D3 provides a more balanced description of different types of non-covalent interactions than Neglect of Diatomic Differential Overlap type of semi-empirical methods (e.g., PM6-D3H4) and PBE-D3 with modest basis sets.

Entities:  

Mesh:

Year:  2015        PMID: 26328834      PMCID: PMC4552706          DOI: 10.1063/1.4929335

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  41 in total

1.  Low-Cost Quantum Chemical Methods for Noncovalent Interactions.

Authors:  Jan Gerit Brandenburg; Manuel Hochheim; Thomas Bredow; Stefan Grimme
Journal:  J Phys Chem Lett       Date:  2014-12-01       Impact factor: 6.475

2.  Improvement of semiempirical response properties with charge-dependent response density.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2005-10-22       Impact factor: 3.488

3.  Density functional tight binding: values of semi-empirical methods in an ab initio era.

Authors:  Qiang Cui; Marcus Elstner
Journal:  Phys Chem Chem Phys       Date:  2014-07-28       Impact factor: 3.676

4.  Communication: The effect of dispersion corrections on the melting temperature of liquid water.

Authors:  Soohaeng Yoo; Sotiris S Xantheas
Journal:  J Chem Phys       Date:  2011-03-28       Impact factor: 3.488

5.  Effect of the damping function in dispersion corrected density functional theory.

Authors:  Stefan Grimme; Stephan Ehrlich; Lars Goerigk
Journal:  J Comput Chem       Date:  2011-03-01       Impact factor: 3.376

6.  Polarized Molecular Orbital Model Chemistry. I. Ab Initio Foundations.

Authors:  Luke Fiedler; Jiali Gao; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2011-03-03       Impact factor: 6.006

7.  Extended polarization in third-order SCC-DFTB from chemical-potential equalization.

Authors:  Steve Kaminski; Timothy J Giese; Michael Gaus; Darrin M York; Marcus Elstner
Journal:  J Phys Chem A       Date:  2012-09-04       Impact factor: 2.781

8.  The accuracy of quantum chemical methods for large noncovalent complexes.

Authors:  Robert Sedlak; Tomasz Janowski; Michal Pitoňák; Jan Rezáč; Peter Pulay; Pavel Hobza
Journal:  J Chem Theory Comput       Date:  2013-08-13       Impact factor: 6.006

9.  Assessing the Accuracy of Density Functional and Semiempirical Wave Function Methods for Water Nanoparticles: Comparing Binding and Relative Energies of (H2O)16 and (H2O)17 to CCSD(T) Results.

Authors:  Hannah R Leverentz; Helena W Qi; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2013-01-02       Impact factor: 6.006

10.  Multipolar Ewald methods, 2: applications using a quantum mechanical force field.

Authors:  Timothy J Giese; Maria T Panteva; Haoyuan Chen; Darrin M York
Journal:  J Chem Theory Comput       Date:  2015-02-10       Impact factor: 6.006

View more
  16 in total

1.  Copper Oxidation/Reduction in Water and Protein: Studies with DFTB3/MM and VALBOND Molecular Dynamics Simulations.

Authors:  Haiyun Jin; Puja Goyal; Akshaya Kumar Das; Michael Gaus; Markus Meuwly; Qiang Cui
Journal:  J Phys Chem B       Date:  2015-12-17       Impact factor: 2.991

Review 2.  Metal Ion Modeling Using Classical Mechanics.

Authors:  Pengfei Li; Kenneth M Merz
Journal:  Chem Rev       Date:  2017-01-03       Impact factor: 60.622

3.  Perspective: Quantum mechanical methods in biochemistry and biophysics.

Authors:  Qiang Cui
Journal:  J Chem Phys       Date:  2016-10-14       Impact factor: 3.488

4.  Exploring the applicability of density functional tight binding to transition metal ions. Parameterization for nickel with the spin-polarized DFTB3 model.

Authors:  Milena Vujović; Mioy Huynh; Sebastian Steiner; Pablo Garcia-Fernandez; Marcus Elstner; Qiang Cui; Maja Gruden
Journal:  J Comput Chem       Date:  2018-10-09       Impact factor: 3.376

Review 5.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

6.  Multi-level free energy simulation with a staged transformation approach.

Authors:  Shingo Ito; Qiang Cui
Journal:  J Chem Phys       Date:  2020-07-28       Impact factor: 3.488

7.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

8.  Intermolecular interactions in the condensed phase: Evaluation of semi-empirical quantum mechanical methods.

Authors:  Anders S Christensen; Jimmy C Kromann; Jan H Jensen; Qiang Cui
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

9.  Analysis of Density Functional Tight Binding with Natural Bonding Orbitals.

Authors:  Xiya Lu; Juan Duchimaza-Heredia; Qiang Cui
Journal:  J Phys Chem A       Date:  2019-08-15       Impact factor: 2.781

10.  Interactions between large molecules pose a puzzle for reference quantum mechanical methods.

Authors:  Yasmine S Al-Hamdani; Péter R Nagy; Andrea Zen; Dennis Barton; Mihály Kállay; Jan Gerit Brandenburg; Alexandre Tkatchenko
Journal:  Nat Commun       Date:  2021-06-24       Impact factor: 14.919

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.