Literature DB >> 23236264

Polarized Molecular Orbital Model Chemistry. I. Ab Initio Foundations.

Luke Fiedler1, Jiali Gao, Donald G Truhlar.   

Abstract

The objective of this paper is to examine the minimal requirements for obtaining semiquantitative polarizabilities of molecules, in order to provide a well-founded starting point for a new semiempirical molecular orbital formulation that is more suitable than presently available methods for simulating electronic polarization effects. For this purpose, we present polarizability calculations for 38 molecules with 36 basis sets, including many unconventional ones, and five semiempirical molecular orbital theories based on neglect of diatomic differential overlap. We conclude that two basis sets are particularly promising to serve as bases for semiempirical improvement, namely STO-3G(,P), in which diffuse p functions are added to all hydrogens, and 3-(21,3,21)G in which a minimal basis set is augmented with one extra s function on every atom. We especially recommend the former because all intra-atomic overlap integrals are zero by symmetry, which makes it a better candidate for neglect-of-differential-overlap treatments.

Entities:  

Year:  2011        PMID: 23236264      PMCID: PMC3518311          DOI: 10.1021/ct1006373

Source DB:  PubMed          Journal:  J Chem Theory Comput        ISSN: 1549-9618            Impact factor:   6.006


  7 in total

1.  RM1: a reparameterization of AM1 for H, C, N, O, P, S, F, Cl, Br, and I.

Authors:  Gerd B Rocha; Ricardo O Freire; Alfredo M Simas; James J P Stewart
Journal:  J Comput Chem       Date:  2006-07-30       Impact factor: 3.376

2.  The Design of a Next Generation Force Field: The X-POL Potential.

Authors:  Wangshen Xie; Jiali Gao
Journal:  J Chem Theory Comput       Date:  2007-11       Impact factor: 6.006

3.  The variational explicit polarization potential and analytical first derivative of energy: Towards a next generation force field.

Authors:  Wangshen Xie; Lingchun Song; Donald G Truhlar; Jiali Gao
Journal:  J Chem Phys       Date:  2008-06-21       Impact factor: 3.488

4.  X-Pol Potential: An Electronic Structure-Based Force Field for Molecular Dynamics Simulation of a Solvated Protein in Water.

Authors:  Wangshen Xie; Modesto Orozco; Donald G Truhlar; Jiali Gao
Journal:  J Chem Theory Comput       Date:  2009-02-17       Impact factor: 6.006

5.  Optimization of parameters for semiempirical methods V: modification of NDDO approximations and application to 70 elements.

Authors:  James J P Stewart
Journal:  J Mol Model       Date:  2007-09-09       Impact factor: 1.810

6.  Incorporation of a QM/MM buffer zone in the variational double self-consistent field method.

Authors:  Wangshen Xie; Lingchun Song; Donald G Truhlar; Jiali Gao
Journal:  J Phys Chem B       Date:  2008-10-21       Impact factor: 2.991

7.  Explicit polarization (X-Pol) potential using ab initio molecular orbital theory and density functional theory.

Authors:  Lingchun Song; Jaebeom Han; Yen-lin Lin; Wangshen Xie; Jiali Gao
Journal:  J Phys Chem A       Date:  2009-10-29       Impact factor: 2.781

  7 in total
  11 in total

1.  Polarization-induced σ-holes and hydrogen bonding.

Authors:  Matthias Hennemann; Jane S Murray; Peter Politzer; Kevin E Riley; Timothy Clark
Journal:  J Mol Model       Date:  2011-10-21       Impact factor: 1.810

2.  Quantum mechanical force field for water with explicit electronic polarization.

Authors:  Jaebeom Han; Michael J M Mazack; Peng Zhang; Donald G Truhlar; Jiali Gao
Journal:  J Chem Phys       Date:  2013-08-07       Impact factor: 3.488

Review 3.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

4.  Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization.

Authors:  Anders S Christensen; Marcus Elstner; Qiang Cui
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

5.  Polarized Molecular Orbital Model Chemistry 3. The PMO Method Extended to Organic Chemistry.

Authors:  Miho Isegawa; Luke Fiedler; Hannah R Leverentz; Yingjie Wang; Santhanamoorthi Nachimuthu; Jiali Gao; Donald G Truhlar
Journal:  J Chem Theory Comput       Date:  2013-01-08       Impact factor: 6.006

6.  Density-functional expansion methods: Grand challenges.

Authors:  Timothy J Giese; Darrin M York
Journal:  Theor Chem Acc       Date:  2012-02-21       Impact factor: 1.702

7.  Quantum mechanical force field for hydrogen fluoride with explicit electronic polarization.

Authors:  Michael J M Mazack; Jiali Gao
Journal:  J Chem Phys       Date:  2014-05-28       Impact factor: 3.488

8.  Doubly Polarized QM/MM with Machine Learning Chaperone Polarizability.

Authors:  Bryant Kim; Yihan Shao; Jingzhi Pu
Journal:  J Chem Theory Comput       Date:  2021-11-01       Impact factor: 6.578

9.  Opposing Electronic and Nuclear Quantum Effects on Hydrogen Bonds in H2 O and D2 O.

Authors:  Timothy Clark; Julian Heske; Thomas D Kühne
Journal:  Chemphyschem       Date:  2019-09-10       Impact factor: 3.102

10.  Models of necessity.

Authors:  Timothy Clark; Martin G Hicks
Journal:  Beilstein J Org Chem       Date:  2020-07-13       Impact factor: 2.883

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