Literature DB >> 16268682

Improvement of semiempirical response properties with charge-dependent response density.

Timothy J Giese1, Darrin M York.   

Abstract

The present work outlines a new method for treatment of charge-dependent polarizability in semiempirical quantum models for use in combined quantum-mechanical/molecular mechanical simulations of biological reactions. The method addresses a major shortcoming in the performance of conventional semiempirical models for these simulations that is tied to the use of a localized minimal atomic-orbital basis set. The present approach has the advantages that it uses a density basis that retains a set of linear-response equations, does not increase the atomic-orbital basis, and avoids the problem of artificial charge transfer and scaling of the polarizability seen in related models that allow atomic charges to fluctuate. The model introduces four new atom-based parameters and has been tested with the modified neglect of differential overlap d-orbital Hamiltonian against 1132 molecules and ions and shown to decrease the dipole moment and polarizability errors by factors of 2 and 10, respectively, with respect to density-functional results. The method performs impressively for a variety of charge states (from 2+ to 2-), and offers a potentially powerful extension in the design of next generation semiempirical quantum models for accurate simulations of highly charged biological reactions.

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Year:  2005        PMID: 16268682     DOI: 10.1063/1.2080007

Source DB:  PubMed          Journal:  J Chem Phys        ISSN: 0021-9606            Impact factor:   3.488


  15 in total

1.  Density-functional expansion methods: evaluation of LDA, GGA, and meta-GGA functionals and different integral approximations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2010-12-28       Impact factor: 3.488

2.  Contracted auxiliary Gaussian basis integral and derivative evaluation.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Chem Phys       Date:  2008-02-14       Impact factor: 3.488

Review 3.  Classical electrostatics for biomolecular simulations.

Authors:  G Andrés Cisneros; Mikko Karttunen; Pengyu Ren; Celeste Sagui
Journal:  Chem Rev       Date:  2013-08-27       Impact factor: 60.622

Review 4.  Semiempirical Quantum Mechanical Methods for Noncovalent Interactions for Chemical and Biochemical Applications.

Authors:  Anders S Christensen; Tomáš Kubař; Qiang Cui; Marcus Elstner
Journal:  Chem Rev       Date:  2016-04-13       Impact factor: 60.622

5.  A modified QM/MM Hamiltonian with the Self-Consistent-Charge Density-Functional-Tight-Binding Theory for highly charged QM regions.

Authors:  Guanhua Hou; Xiao Zhu; Marcus Elstner; Qiang Cui
Journal:  J Chem Theory Comput       Date:  2012-11-13       Impact factor: 6.006

6.  Quantum mechanical force fields for condensed phase molecular simulations.

Authors:  Timothy J Giese; Darrin M York
Journal:  J Phys Condens Matter       Date:  2017-08-17       Impact factor: 2.333

7.  Extended polarization in third-order SCC-DFTB from chemical-potential equalization.

Authors:  Steve Kaminski; Timothy J Giese; Michael Gaus; Darrin M York; Marcus Elstner
Journal:  J Phys Chem A       Date:  2012-09-04       Impact factor: 2.781

8.  Intermolecular interactions in the condensed phase: Evaluation of semi-empirical quantum mechanical methods.

Authors:  Anders S Christensen; Jimmy C Kromann; Jan H Jensen; Qiang Cui
Journal:  J Chem Phys       Date:  2017-10-28       Impact factor: 3.488

9.  Analysis of Density Functional Tight Binding with Natural Bonding Orbitals.

Authors:  Xiya Lu; Juan Duchimaza-Heredia; Qiang Cui
Journal:  J Phys Chem A       Date:  2019-08-15       Impact factor: 2.781

10.  Improving intermolecular interactions in DFTB3 using extended polarization from chemical-potential equalization.

Authors:  Anders S Christensen; Marcus Elstner; Qiang Cui
Journal:  J Chem Phys       Date:  2015-08-28       Impact factor: 3.488

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